Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.36■□□□□ 0.85
Trav6-1A0A075B5Z8 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Trav6-1A0A075B5Z8 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC20.35■□□□□ 0.85
Trav6-1A0A075B5Z8 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Trav6-1A0A075B5Z8 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trav6-1A0A075B5Z8 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trav6-1A0A075B5Z8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Trav6-1A0A075B5Z8 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
Trav6-1A0A075B5Z8 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Trav6-1A0A075B5Z8 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trav6-1A0A075B5Z8 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trav6-1A0A075B5Z8 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Trav6-1A0A075B5Z8 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav6-1A0A075B5Z8 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav6-1A0A075B5Z8 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.3■□□□□ 0.84
Trav6-1A0A075B5Z8 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav6-1A0A075B5Z8 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav6-1A0A075B5Z8 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trav6-1A0A075B5Z8 Gm25262-201ENSMUST00000174934 133 ntBASIC20.29■□□□□ 0.84
Trav6-1A0A075B5Z8 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trav6-1A0A075B5Z8 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Trav6-1A0A075B5Z8 AC166822.3-201ENSMUST00000227394 661 ntBASIC20.28■□□□□ 0.84
Trav6-1A0A075B5Z8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trav6-1A0A075B5Z8 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Trav6-1A0A075B5Z8 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trav6-1A0A075B5Z8 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC20.25■□□□□ 0.83
Trav6-1A0A075B5Z8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav6-1A0A075B5Z8 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC20.25■□□□□ 0.83
Trav6-1A0A075B5Z8 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trav6-1A0A075B5Z8 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
Trav6-1A0A075B5Z8 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav6-1A0A075B5Z8 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav6-1A0A075B5Z8 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Trav6-1A0A075B5Z8 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20.23■□□□□ 0.83
Trav6-1A0A075B5Z8 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.22■□□□□ 0.83
Trav6-1A0A075B5Z8 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav6-1A0A075B5Z8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav6-1A0A075B5Z8 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
Trav6-1A0A075B5Z8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.21■□□□□ 0.83
Trav6-1A0A075B5Z8 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.21■□□□□ 0.83
Trav6-1A0A075B5Z8 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav6-1A0A075B5Z8 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trav6-1A0A075B5Z8 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6-1A0A075B5Z8 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6-1A0A075B5Z8 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6-1A0A075B5Z8 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6-1A0A075B5Z8 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6-1A0A075B5Z8 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Trav6-1A0A075B5Z8 Gm30346-201ENSMUST00000218641 1699 ntBASIC20.17■□□□□ 0.82
Trav6-1A0A075B5Z8 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav6-1A0A075B5Z8 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trav6-1A0A075B5Z8 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC20.16■□□□□ 0.82
Trav6-1A0A075B5Z8 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav6-1A0A075B5Z8 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC20.15■□□□□ 0.82
Trav6-1A0A075B5Z8 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav6-1A0A075B5Z8 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav6-1A0A075B5Z8 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav6-1A0A075B5Z8 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trav6-1A0A075B5Z8 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav6-1A0A075B5Z8 Gm17082-201ENSMUST00000166043 1091 ntBASIC20.11■□□□□ 0.81
Trav6-1A0A075B5Z8 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
Trav6-1A0A075B5Z8 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav6-1A0A075B5Z8 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav6-1A0A075B5Z8 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav6-1A0A075B5Z8 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Trav6-1A0A075B5Z8 Gm27322-201ENSMUST00000184007 104 ntBASIC20.1■□□□□ 0.81
Trav6-1A0A075B5Z8 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav6-1A0A075B5Z8 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Trav6-1A0A075B5Z8 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Trav6-1A0A075B5Z8 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav6-1A0A075B5Z8 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav6-1A0A075B5Z8 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav6-1A0A075B5Z8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Trav6-1A0A075B5Z8 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Trav6-1A0A075B5Z8 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Trav6-1A0A075B5Z8 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav6-1A0A075B5Z8 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav6-1A0A075B5Z8 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trav6-1A0A075B5Z8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC20.05■□□□□ 0.8
Trav6-1A0A075B5Z8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trav6-1A0A075B5Z8 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trav6-1A0A075B5Z8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.04■□□□□ 0.8
Trav6-1A0A075B5Z8 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC20.03■□□□□ 0.8
Trav6-1A0A075B5Z8 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav6-1A0A075B5Z8 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Trav6-1A0A075B5Z8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6-1A0A075B5Z8 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav6-1A0A075B5Z8 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trav6-1A0A075B5Z8 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav6-1A0A075B5Z8 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav6-1A0A075B5Z8 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trav6-1A0A075B5Z8 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav6-1A0A075B5Z8 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trav6-1A0A075B5Z8 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Trav6-1A0A075B5Z8 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav6-1A0A075B5Z8 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav6-1A0A075B5Z8 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav6-1A0A075B5Z8 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Trav6-1A0A075B5Z8 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Trav6-1A0A075B5Z8 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms