Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col4a4Q9QZR9 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.84■□□□□ 0.77
Col4a4Q9QZR9 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col4a4Q9QZR9 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col4a4Q9QZR9 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col4a4Q9QZR9 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col4a4Q9QZR9 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col4a4Q9QZR9 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Col4a4Q9QZR9 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col4a4Q9QZR9 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col4a4Q9QZR9 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col4a4Q9QZR9 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Col4a4Q9QZR9 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.83■□□□□ 0.76
Col4a4Q9QZR9 Gm11249-201ENSMUST00000117071 859 ntBASIC19.83■□□□□ 0.76
Col4a4Q9QZR9 Gm10819-201ENSMUST00000099988 561 ntBASIC19.83■□□□□ 0.76
Col4a4Q9QZR9 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col4a4Q9QZR9 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Gm2399-201ENSMUST00000104944 225 ntBASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Col4a4Q9QZR9 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col4a4Q9QZR9 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.8■□□□□ 0.76
Col4a4Q9QZR9 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC19.8■□□□□ 0.76
Col4a4Q9QZR9 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col4a4Q9QZR9 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col4a4Q9QZR9 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Col4a4Q9QZR9 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC19.8■□□□□ 0.76
Col4a4Q9QZR9 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.8■□□□□ 0.76
Col4a4Q9QZR9 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col4a4Q9QZR9 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col4a4Q9QZR9 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col4a4Q9QZR9 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col4a4Q9QZR9 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col4a4Q9QZR9 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC19.79■□□□□ 0.76
Col4a4Q9QZR9 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Col4a4Q9QZR9 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col4a4Q9QZR9 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col4a4Q9QZR9 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Gm18666-201ENSMUST00000190039 958 ntBASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col4a4Q9QZR9 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Gm43799-201ENSMUST00000201845 579 ntBASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Col4a4Q9QZR9 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Col4a4Q9QZR9 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
Col4a4Q9QZR9 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col4a4Q9QZR9 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col4a4Q9QZR9 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col4a4Q9QZR9 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col4a4Q9QZR9 Gm9987-201ENSMUST00000069768 567 ntBASIC19.76■□□□□ 0.75
Col4a4Q9QZR9 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col4a4Q9QZR9 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col4a4Q9QZR9 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Col4a4Q9QZR9 Gm10231-201ENSMUST00000181584 441 ntBASIC19.75■□□□□ 0.75
Col4a4Q9QZR9 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col4a4Q9QZR9 Gm10175-202ENSMUST00000208752 441 ntBASIC19.75■□□□□ 0.75
Col4a4Q9QZR9 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms