Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Trav6-3Q5R1E6 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Trav6-3Q5R1E6 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6-3Q5R1E6 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6-3Q5R1E6 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Trav6-3Q5R1E6 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC15.53■□□□□ 0.08
Trav6-3Q5R1E6 Gm5112-201ENSMUST00000204407 2368 ntBASIC15.53■□□□□ 0.08
Trav6-3Q5R1E6 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav6-3Q5R1E6 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav6-3Q5R1E6 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Trav6-3Q5R1E6 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav6-3Q5R1E6 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav6-3Q5R1E6 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Trav6-3Q5R1E6 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC15.52■□□□□ 0.08
Trav6-3Q5R1E6 Gm14117-201ENSMUST00000122417 843 ntBASIC15.52■□□□□ 0.08
Trav6-3Q5R1E6 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Trav6-3Q5R1E6 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav6-3Q5R1E6 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav6-3Q5R1E6 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav6-3Q5R1E6 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC15.52■□□□□ 0.07
Trav6-3Q5R1E6 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.07
Trav6-3Q5R1E6 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Trav6-3Q5R1E6 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav6-3Q5R1E6 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Trav6-3Q5R1E6 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Golgb1-201ENSMUST00000023534 498 ntBASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Trav6-3Q5R1E6 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trav6-3Q5R1E6 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Gm12922-201ENSMUST00000120626 809 ntBASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trav6-3Q5R1E6 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Gm10571-201ENSMUST00000097869 1638 ntBASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Gm5784-201ENSMUST00000179344 2478 ntBASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trav6-3Q5R1E6 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Gm10209-201ENSMUST00000203397 1607 ntBASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Serp2-204ENSMUST00000228055 705 ntBASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trav6-3Q5R1E6 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms