Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nkx2-4Q9EQM3 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nkx2-4Q9EQM3 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nkx2-4Q9EQM3 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nkx2-4Q9EQM3 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Nkx2-4Q9EQM3 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.11■□□□□ 0.81
Nkx2-4Q9EQM3 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nkx2-4Q9EQM3 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Nkx2-4Q9EQM3 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.11■□□□□ 0.81
Nkx2-4Q9EQM3 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Nkx2-4Q9EQM3 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nkx2-4Q9EQM3 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.1■□□□□ 0.81
Nkx2-4Q9EQM3 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nkx2-4Q9EQM3 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nkx2-4Q9EQM3 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.1■□□□□ 0.81
Nkx2-4Q9EQM3 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nkx2-4Q9EQM3 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Nkx2-4Q9EQM3 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Nkx2-4Q9EQM3 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Nkx2-4Q9EQM3 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Nkx2-4Q9EQM3 Gm5643-201ENSMUST00000117081 966 ntBASIC20.08■□□□□ 0.81
Nkx2-4Q9EQM3 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Nkx2-4Q9EQM3 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.81
Nkx2-4Q9EQM3 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC20.08■□□□□ 0.81
Nkx2-4Q9EQM3 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Nkx2-4Q9EQM3 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Nkx2-4Q9EQM3 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Nkx2-4Q9EQM3 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Nkx2-4Q9EQM3 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Nkx2-4Q9EQM3 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Nkx2-4Q9EQM3 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nkx2-4Q9EQM3 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Nkx2-4Q9EQM3 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Nkx2-4Q9EQM3 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.07■□□□□ 0.8
Nkx2-4Q9EQM3 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.07■□□□□ 0.8
Nkx2-4Q9EQM3 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Nkx2-4Q9EQM3 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nkx2-4Q9EQM3 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nkx2-4Q9EQM3 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nkx2-4Q9EQM3 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC20.06■□□□□ 0.8
Nkx2-4Q9EQM3 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC20.06■□□□□ 0.8
Nkx2-4Q9EQM3 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Nkx2-4Q9EQM3 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nkx2-4Q9EQM3 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nkx2-4Q9EQM3 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nkx2-4Q9EQM3 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Nkx2-4Q9EQM3 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Gm715-201ENSMUST00000117865 831 ntBASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Nkx2-4Q9EQM3 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nkx2-4Q9EQM3 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Nkx2-4Q9EQM3 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nkx2-4Q9EQM3 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC20.04■□□□□ 0.8
Nkx2-4Q9EQM3 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Nkx2-4Q9EQM3 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Nkx2-4Q9EQM3 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nkx2-4Q9EQM3 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nkx2-4Q9EQM3 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Nkx2-4Q9EQM3 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Nkx2-4Q9EQM3 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Nkx2-4Q9EQM3 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC20.03■□□□□ 0.8
Nkx2-4Q9EQM3 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Nkx2-4Q9EQM3 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.02■□□□□ 0.8
Nkx2-4Q9EQM3 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nkx2-4Q9EQM3 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Nkx2-4Q9EQM3 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nkx2-4Q9EQM3 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Nkx2-4Q9EQM3 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Nkx2-4Q9EQM3 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.02■□□□□ 0.79
Nkx2-4Q9EQM3 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Nkx2-4Q9EQM3 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nkx2-4Q9EQM3 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nkx2-4Q9EQM3 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nkx2-4Q9EQM3 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms