Protein–RNA interactions for Protein: Q99PP7

Trim33, E3 ubiquitin-protein ligase TRIM33, mousemouse

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim33Q99PP7 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim33Q99PP7 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim33Q99PP7 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC19.2■□□□□ 0.66
Trim33Q99PP7 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Gm8493-201ENSMUST00000196881 489 ntBASIC19.2■□□□□ 0.66
Trim33Q99PP7 Wdr70-203ENSMUST00000227371 1130 ntBASIC19.2■□□□□ 0.66
Trim33Q99PP7 Gm6139-201ENSMUST00000079261 882 ntBASIC19.2■□□□□ 0.66
Trim33Q99PP7 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim33Q99PP7 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.19■□□□□ 0.66
Trim33Q99PP7 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.19■□□□□ 0.66
Trim33Q99PP7 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Trim33Q99PP7 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim33Q99PP7 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trim33Q99PP7 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim33Q99PP7 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim33Q99PP7 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC19.18■□□□□ 0.66
Trim33Q99PP7 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
Trim33Q99PP7 Gm43173-201ENSMUST00000202246 593 ntBASIC19.18■□□□□ 0.66
Trim33Q99PP7 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim33Q99PP7 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim33Q99PP7 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim33Q99PP7 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.18■□□□□ 0.66
Trim33Q99PP7 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim33Q99PP7 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim33Q99PP7 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim33Q99PP7 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim33Q99PP7 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim33Q99PP7 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim33Q99PP7 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim33Q99PP7 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim33Q99PP7 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Cdkn3-203ENSMUST00000227149 1952 ntBASIC19.16■□□□□ 0.66
Trim33Q99PP7 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC19.16■□□□□ 0.66
Trim33Q99PP7 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim33Q99PP7 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Trim33Q99PP7 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
Trim33Q99PP7 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim33Q99PP7 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim33Q99PP7 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC19.15■□□□□ 0.66
Trim33Q99PP7 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim33Q99PP7 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.14■□□□□ 0.66
Trim33Q99PP7 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim33Q99PP7 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC19.14■□□□□ 0.66
Trim33Q99PP7 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim33Q99PP7 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim33Q99PP7 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim33Q99PP7 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim33Q99PP7 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim33Q99PP7 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Trim33Q99PP7 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.14■□□□□ 0.65
Trim33Q99PP7 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim33Q99PP7 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim33Q99PP7 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim33Q99PP7 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim33Q99PP7 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim33Q99PP7 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim33Q99PP7 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Trim33Q99PP7 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim33Q99PP7 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Trim33Q99PP7 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Trim33Q99PP7 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim33Q99PP7 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim33Q99PP7 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trim33Q99PP7 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim33Q99PP7 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim33Q99PP7 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC19.12■□□□□ 0.65
Trim33Q99PP7 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trim33Q99PP7 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms