Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps28Q9D1C8 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps28Q9D1C8 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Vps28Q9D1C8 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps28Q9D1C8 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps28Q9D1C8 Gm26833-201ENSMUST00000180899 440 ntBASIC20.11■□□□□ 0.81
Vps28Q9D1C8 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps28Q9D1C8 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps28Q9D1C8 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Vps28Q9D1C8 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps28Q9D1C8 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Vps28Q9D1C8 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Vps28Q9D1C8 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Vps28Q9D1C8 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.1■□□□□ 0.81
Vps28Q9D1C8 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps28Q9D1C8 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Vps28Q9D1C8 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps28Q9D1C8 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.09■□□□□ 0.81
Vps28Q9D1C8 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
Vps28Q9D1C8 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps28Q9D1C8 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps28Q9D1C8 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Vps28Q9D1C8 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vps28Q9D1C8 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Smad6-203ENSMUST00000179458 273 ntBASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vps28Q9D1C8 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vps28Q9D1C8 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vps28Q9D1C8 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Vps28Q9D1C8 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.07■□□□□ 0.8
Vps28Q9D1C8 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.07■□□□□ 0.8
Vps28Q9D1C8 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.07■□□□□ 0.8
Vps28Q9D1C8 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps28Q9D1C8 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Vps28Q9D1C8 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Vps28Q9D1C8 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps28Q9D1C8 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps28Q9D1C8 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Vps28Q9D1C8 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vps28Q9D1C8 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Gm40848-201ENSMUST00000221998 324 ntBASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vps28Q9D1C8 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps28Q9D1C8 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vps28Q9D1C8 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vps28Q9D1C8 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vps28Q9D1C8 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.05■□□□□ 0.8
Vps28Q9D1C8 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.05■□□□□ 0.8
Vps28Q9D1C8 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps28Q9D1C8 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps28Q9D1C8 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vps28Q9D1C8 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Vps28Q9D1C8 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps28Q9D1C8 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps28Q9D1C8 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vps28Q9D1C8 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vps28Q9D1C8 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 116.2 ms