Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Clp1Q99LI9 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Clp1Q99LI9 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Clp1Q99LI9 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Clp1Q99LI9 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC21.1■□□□□ 0.97
Clp1Q99LI9 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
Clp1Q99LI9 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Clp1Q99LI9 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.1■□□□□ 0.97
Clp1Q99LI9 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Clp1Q99LI9 Gm10653-202ENSMUST00000139570 835 ntBASIC21.1■□□□□ 0.97
Clp1Q99LI9 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Clp1Q99LI9 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC21.1■□□□□ 0.97
Clp1Q99LI9 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Clp1Q99LI9 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Clp1Q99LI9 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Clp1Q99LI9 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Clp1Q99LI9 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Clp1Q99LI9 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Clp1Q99LI9 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC21.09■□□□□ 0.97
Clp1Q99LI9 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Clp1Q99LI9 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Clp1Q99LI9 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Clp1Q99LI9 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.08■□□□□ 0.97
Clp1Q99LI9 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC21.08■□□□□ 0.97
Clp1Q99LI9 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
Clp1Q99LI9 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
Clp1Q99LI9 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Clp1Q99LI9 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clp1Q99LI9 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clp1Q99LI9 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clp1Q99LI9 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clp1Q99LI9 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clp1Q99LI9 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clp1Q99LI9 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Clp1Q99LI9 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clp1Q99LI9 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Clp1Q99LI9 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Clp1Q99LI9 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Clp1Q99LI9 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Clp1Q99LI9 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Clp1Q99LI9 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.06■□□□□ 0.96
Clp1Q99LI9 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
Clp1Q99LI9 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Clp1Q99LI9 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Gm13146-201ENSMUST00000118508 780 ntBASIC21.04■□□□□ 0.96
Clp1Q99LI9 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Clp1Q99LI9 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clp1Q99LI9 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
Clp1Q99LI9 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC21.03■□□□□ 0.96
Clp1Q99LI9 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clp1Q99LI9 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Clp1Q99LI9 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clp1Q99LI9 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clp1Q99LI9 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clp1Q99LI9 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Clp1Q99LI9 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Clp1Q99LI9 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Clp1Q99LI9 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Clp1Q99LI9 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Clp1Q99LI9 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Clp1Q99LI9 Gm3807-201ENSMUST00000193520 1168 ntBASIC21.02■□□□□ 0.96
Clp1Q99LI9 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Clp1Q99LI9 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Clp1Q99LI9 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Clp1Q99LI9 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Clp1Q99LI9 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Clp1Q99LI9 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Clp1Q99LI9 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC21.01■□□□□ 0.95
Clp1Q99LI9 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC21.01■□□□□ 0.95
Clp1Q99LI9 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Clp1Q99LI9 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Clp1Q99LI9 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Clp1Q99LI9 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Clp1Q99LI9 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
Clp1Q99LI9 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Clp1Q99LI9 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Clp1Q99LI9 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Clp1Q99LI9 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Clp1Q99LI9 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Clp1Q99LI9 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Clp1Q99LI9 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
Clp1Q99LI9 Gm20760-201ENSMUST00000179197 648 ntBASIC21■□□□□ 0.95
Clp1Q99LI9 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC21■□□□□ 0.95
Clp1Q99LI9 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Clp1Q99LI9 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21■□□□□ 0.95
Clp1Q99LI9 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC21■□□□□ 0.95
Clp1Q99LI9 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 63 ms