Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
Scn11aQ9R053 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
Scn11aQ9R053 Peli2-204ENSMUST00000226513 1320 ntBASIC32.35■■■□□ 2.77
Scn11aQ9R053 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
Scn11aQ9R053 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
Scn11aQ9R053 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC32.3■■■□□ 2.76
Scn11aQ9R053 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Scn11aQ9R053 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Scn11aQ9R053 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.76
Scn11aQ9R053 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC32.22■■■□□ 2.75
Scn11aQ9R053 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC32.22■■■□□ 2.75
Scn11aQ9R053 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
Scn11aQ9R053 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC32.21■■■□□ 2.75
Scn11aQ9R053 Gm16148-201ENSMUST00000119653 893 ntBASIC32.19■■■□□ 2.74
Scn11aQ9R053 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
Scn11aQ9R053 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
Scn11aQ9R053 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
Scn11aQ9R053 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
Scn11aQ9R053 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
Scn11aQ9R053 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
Scn11aQ9R053 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
Scn11aQ9R053 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
Scn11aQ9R053 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Scn11aQ9R053 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC32.11■■■□□ 2.73
Scn11aQ9R053 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC32.11■■■□□ 2.73
Scn11aQ9R053 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Scn11aQ9R053 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Scn11aQ9R053 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC32.07■■■□□ 2.72
Scn11aQ9R053 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC32.06■■■□□ 2.72
Scn11aQ9R053 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
Scn11aQ9R053 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC32■■■□□ 2.71
Scn11aQ9R053 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Scn11aQ9R053 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
Scn11aQ9R053 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
Scn11aQ9R053 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC31.98■■■□□ 2.71
Scn11aQ9R053 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC31.98■■■□□ 2.71
Scn11aQ9R053 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Scn11aQ9R053 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
Scn11aQ9R053 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC31.95■■■□□ 2.71
Scn11aQ9R053 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
Scn11aQ9R053 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC31.93■■■□□ 2.7
Scn11aQ9R053 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Scn11aQ9R053 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Scn11aQ9R053 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Scn11aQ9R053 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Scn11aQ9R053 Gm5987-201ENSMUST00000196433 1151 ntBASIC31.86■■■□□ 2.69
Scn11aQ9R053 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC31.86■■■□□ 2.69
Scn11aQ9R053 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Scn11aQ9R053 Tdp2-203ENSMUST00000223804 1136 ntBASIC31.85■■■□□ 2.69
Scn11aQ9R053 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC31.85■■■□□ 2.69
Scn11aQ9R053 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
Scn11aQ9R053 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
Scn11aQ9R053 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Scn11aQ9R053 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Scn11aQ9R053 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC31.76■■■□□ 2.68
Scn11aQ9R053 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Scn11aQ9R053 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
Scn11aQ9R053 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
Scn11aQ9R053 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Scn11aQ9R053 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Scn11aQ9R053 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC31.67■■■□□ 2.66
Scn11aQ9R053 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
Scn11aQ9R053 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC31.65■■■□□ 2.66
Scn11aQ9R053 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Scn11aQ9R053 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC31.64■■■□□ 2.66
Scn11aQ9R053 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Scn11aQ9R053 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Scn11aQ9R053 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Scn11aQ9R053 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
Scn11aQ9R053 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Scn11aQ9R053 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
Scn11aQ9R053 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Scn11aQ9R053 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Scn11aQ9R053 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Scn11aQ9R053 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC31.56■■■□□ 2.64
Scn11aQ9R053 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC31.56■■■□□ 2.64
Scn11aQ9R053 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Scn11aQ9R053 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Scn11aQ9R053 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
Scn11aQ9R053 Gm9397-201ENSMUST00000200125 605 ntBASIC31.48■■■□□ 2.63
Scn11aQ9R053 Gm45855-201ENSMUST00000212546 880 ntBASIC31.48■■■□□ 2.63
Scn11aQ9R053 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Scn11aQ9R053 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
Scn11aQ9R053 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Scn11aQ9R053 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC31.46■■■□□ 2.63
Scn11aQ9R053 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC31.45■■■□□ 2.63
Scn11aQ9R053 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC31.44■■■□□ 2.62
Scn11aQ9R053 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC31.44■■■□□ 2.62
Scn11aQ9R053 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Scn11aQ9R053 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Scn11aQ9R053 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
Scn11aQ9R053 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
Scn11aQ9R053 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC31.41■■■□□ 2.62
Scn11aQ9R053 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC31.4■■■□□ 2.62
Scn11aQ9R053 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Scn11aQ9R053 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
Scn11aQ9R053 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Scn11aQ9R053 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC31.38■■■□□ 2.61
Scn11aQ9R053 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Scn11aQ9R053 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC31.36■■■□□ 2.61
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms