Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC30.9■■■□□ 2.54
Cchcr1Q8K2I2 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC30.89■■■□□ 2.54
Cchcr1Q8K2I2 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Cchcr1Q8K2I2 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
Cchcr1Q8K2I2 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Cchcr1Q8K2I2 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Cchcr1Q8K2I2 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.82■■■□□ 2.52
Cchcr1Q8K2I2 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.78■■■□□ 2.52
Cchcr1Q8K2I2 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
Cchcr1Q8K2I2 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Cchcr1Q8K2I2 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC30.77■■■□□ 2.52
Cchcr1Q8K2I2 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30.76■■■□□ 2.51
Cchcr1Q8K2I2 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
Cchcr1Q8K2I2 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Cchcr1Q8K2I2 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Cchcr1Q8K2I2 Gm27322-201ENSMUST00000184007 104 ntBASIC30.72■■■□□ 2.51
Cchcr1Q8K2I2 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
Cchcr1Q8K2I2 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC30.71■■■□□ 2.51
Cchcr1Q8K2I2 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC30.71■■■□□ 2.51
Cchcr1Q8K2I2 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.7■■■□□ 2.51
Cchcr1Q8K2I2 AC166822.3-201ENSMUST00000227394 661 ntBASIC30.7■■■□□ 2.51
Cchcr1Q8K2I2 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC30.69■■■□□ 2.5
Cchcr1Q8K2I2 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Cchcr1Q8K2I2 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cchcr1Q8K2I2 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
Cchcr1Q8K2I2 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Cchcr1Q8K2I2 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Cchcr1Q8K2I2 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Cchcr1Q8K2I2 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Cchcr1Q8K2I2 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.65■■■□□ 2.5
Cchcr1Q8K2I2 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
Cchcr1Q8K2I2 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC30.64■■■□□ 2.5
Cchcr1Q8K2I2 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Cchcr1Q8K2I2 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.64■■■□□ 2.5
Cchcr1Q8K2I2 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.49
Cchcr1Q8K2I2 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC30.63■■■□□ 2.49
Cchcr1Q8K2I2 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Cchcr1Q8K2I2 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Cchcr1Q8K2I2 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC30.61■■■□□ 2.49
Cchcr1Q8K2I2 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Cchcr1Q8K2I2 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Cchcr1Q8K2I2 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC30.53■■■□□ 2.48
Cchcr1Q8K2I2 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Cchcr1Q8K2I2 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Cchcr1Q8K2I2 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC30.51■■■□□ 2.48
Cchcr1Q8K2I2 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Cchcr1Q8K2I2 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Cchcr1Q8K2I2 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Cchcr1Q8K2I2 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC30.45■■■□□ 2.47
Cchcr1Q8K2I2 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Cchcr1Q8K2I2 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Cchcr1Q8K2I2 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
Cchcr1Q8K2I2 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Cchcr1Q8K2I2 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Cchcr1Q8K2I2 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
Cchcr1Q8K2I2 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
Cchcr1Q8K2I2 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Cchcr1Q8K2I2 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Cchcr1Q8K2I2 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Cchcr1Q8K2I2 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Cchcr1Q8K2I2 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Cchcr1Q8K2I2 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
Cchcr1Q8K2I2 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Cchcr1Q8K2I2 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
Cchcr1Q8K2I2 Gm26115-201ENSMUST00000175605 87 ntBASIC30.28■■■□□ 2.44
Cchcr1Q8K2I2 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
Cchcr1Q8K2I2 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Cchcr1Q8K2I2 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
Cchcr1Q8K2I2 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Cchcr1Q8K2I2 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Cchcr1Q8K2I2 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Cchcr1Q8K2I2 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Cchcr1Q8K2I2 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC30.23■■■□□ 2.43
Cchcr1Q8K2I2 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Cchcr1Q8K2I2 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
Cchcr1Q8K2I2 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC30.2■■■□□ 2.43
Cchcr1Q8K2I2 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Cchcr1Q8K2I2 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Cchcr1Q8K2I2 Gm8109-201ENSMUST00000194076 746 ntBASIC30.19■■■□□ 2.42
Cchcr1Q8K2I2 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Cchcr1Q8K2I2 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC30.18■■■□□ 2.42
Cchcr1Q8K2I2 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cchcr1Q8K2I2 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cchcr1Q8K2I2 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC30.17■■■□□ 2.42
Cchcr1Q8K2I2 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
Cchcr1Q8K2I2 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
Cchcr1Q8K2I2 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Cchcr1Q8K2I2 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC30.13■■■□□ 2.41
Cchcr1Q8K2I2 Gm9905-201ENSMUST00000065740 1845 ntBASIC30.12■■■□□ 2.41
Cchcr1Q8K2I2 Zxda-201ENSMUST00000117281 2621 ntBASIC30.11■■■□□ 2.41
Cchcr1Q8K2I2 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC30.1■■■□□ 2.41
Cchcr1Q8K2I2 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC30.09■■■□□ 2.41
Cchcr1Q8K2I2 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
Cchcr1Q8K2I2 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Cchcr1Q8K2I2 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC30.06■■■□□ 2.4
Cchcr1Q8K2I2 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
Cchcr1Q8K2I2 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Cchcr1Q8K2I2 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
Cchcr1Q8K2I2 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC30.04■■■□□ 2.4
Cchcr1Q8K2I2 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC30■■■□□ 2.39
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms