Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 AL845457.1-201ENSMUST00000197244 68 ntBASIC30.65■■■□□ 2.5
Nup88Q8CEC0 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Nup88Q8CEC0 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Nup88Q8CEC0 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Nup88Q8CEC0 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Nup88Q8CEC0 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Nup88Q8CEC0 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Nup88Q8CEC0 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Nup88Q8CEC0 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Nup88Q8CEC0 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
Nup88Q8CEC0 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Nup88Q8CEC0 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Nup88Q8CEC0 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
Nup88Q8CEC0 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
Nup88Q8CEC0 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC30.53■■■□□ 2.48
Nup88Q8CEC0 AC153504.1-201ENSMUST00000218379 2290 ntBASIC30.53■■■□□ 2.48
Nup88Q8CEC0 Gm6658-202ENSMUST00000209493 1885 ntBASIC30.52■■■□□ 2.48
Nup88Q8CEC0 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
Nup88Q8CEC0 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
Nup88Q8CEC0 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Nup88Q8CEC0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
Nup88Q8CEC0 Zfp131-205ENSMUST00000223812 663 ntBASIC30.44■■■□□ 2.46
Nup88Q8CEC0 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
Nup88Q8CEC0 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
Nup88Q8CEC0 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
Nup88Q8CEC0 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Nup88Q8CEC0 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
Nup88Q8CEC0 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Nup88Q8CEC0 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Nup88Q8CEC0 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Nup88Q8CEC0 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC30.32■■■□□ 2.44
Nup88Q8CEC0 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Nup88Q8CEC0 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Nup88Q8CEC0 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
Nup88Q8CEC0 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
Nup88Q8CEC0 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Nup88Q8CEC0 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Nup88Q8CEC0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
Nup88Q8CEC0 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Nup88Q8CEC0 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.42
Nup88Q8CEC0 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Nup88Q8CEC0 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
Nup88Q8CEC0 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
Nup88Q8CEC0 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
Nup88Q8CEC0 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.16■■■□□ 2.42
Nup88Q8CEC0 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC30.15■■■□□ 2.42
Nup88Q8CEC0 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
Nup88Q8CEC0 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Nup88Q8CEC0 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30.11■■■□□ 2.41
Nup88Q8CEC0 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC30.09■■■□□ 2.41
Nup88Q8CEC0 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
Nup88Q8CEC0 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
Nup88Q8CEC0 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Nup88Q8CEC0 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Nup88Q8CEC0 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Nup88Q8CEC0 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30.06■■■□□ 2.4
Nup88Q8CEC0 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
Nup88Q8CEC0 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
Nup88Q8CEC0 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
Nup88Q8CEC0 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Nup88Q8CEC0 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Nup88Q8CEC0 Gm16148-201ENSMUST00000119653 893 ntBASIC30.03■■■□□ 2.4
Nup88Q8CEC0 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
Nup88Q8CEC0 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
Nup88Q8CEC0 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
Nup88Q8CEC0 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC29.99■■■□□ 2.39
Nup88Q8CEC0 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
Nup88Q8CEC0 Peli2-204ENSMUST00000226513 1320 ntBASIC29.98■■■□□ 2.39
Nup88Q8CEC0 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
Nup88Q8CEC0 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC29.97■■■□□ 2.39
Nup88Q8CEC0 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
Nup88Q8CEC0 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
Nup88Q8CEC0 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
Nup88Q8CEC0 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC29.93■■■□□ 2.38
Nup88Q8CEC0 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC29.92■■■□□ 2.38
Nup88Q8CEC0 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC29.91■■■□□ 2.38
Nup88Q8CEC0 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
Nup88Q8CEC0 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
Nup88Q8CEC0 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC29.87■■■□□ 2.37
Nup88Q8CEC0 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Nup88Q8CEC0 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Nup88Q8CEC0 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC29.86■■■□□ 2.37
Nup88Q8CEC0 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
Nup88Q8CEC0 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
Nup88Q8CEC0 Mipep-204ENSMUST00000225043 1548 ntBASIC29.85■■■□□ 2.37
Nup88Q8CEC0 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC29.81■■■□□ 2.36
Nup88Q8CEC0 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
Nup88Q8CEC0 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Nup88Q8CEC0 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
Nup88Q8CEC0 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
Nup88Q8CEC0 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC29.78■■■□□ 2.36
Nup88Q8CEC0 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Nup88Q8CEC0 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC29.76■■■□□ 2.35
Nup88Q8CEC0 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Nup88Q8CEC0 Tdp2-203ENSMUST00000223804 1136 ntBASIC29.75■■■□□ 2.35
Nup88Q8CEC0 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Nup88Q8CEC0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC29.74■■■□□ 2.35
Nup88Q8CEC0 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Nup88Q8CEC0 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Nup88Q8CEC0 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Retrieved 100 of 76,532 protein–RNA pairs in 13.9 ms