Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Sh3rf3Q8C120 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Sh3rf3Q8C120 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Sh3rf3Q8C120 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
Sh3rf3Q8C120 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
Sh3rf3Q8C120 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Sh3rf3Q8C120 AC166822.3-201ENSMUST00000227394 661 ntBASIC27.31■■□□□ 1.96
Sh3rf3Q8C120 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
Sh3rf3Q8C120 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC27.28■■□□□ 1.96
Sh3rf3Q8C120 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Sh3rf3Q8C120 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
Sh3rf3Q8C120 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Sh3rf3Q8C120 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.95
Sh3rf3Q8C120 Gm6658-202ENSMUST00000209493 1885 ntBASIC27.19■■□□□ 1.94
Sh3rf3Q8C120 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Sh3rf3Q8C120 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Sh3rf3Q8C120 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Sh3rf3Q8C120 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
Sh3rf3Q8C120 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC27.07■■□□□ 1.92
Sh3rf3Q8C120 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Sh3rf3Q8C120 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Sh3rf3Q8C120 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Sh3rf3Q8C120 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Sh3rf3Q8C120 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
Sh3rf3Q8C120 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
Sh3rf3Q8C120 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Sh3rf3Q8C120 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Sh3rf3Q8C120 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Sh3rf3Q8C120 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Sh3rf3Q8C120 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Sh3rf3Q8C120 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
Sh3rf3Q8C120 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
Sh3rf3Q8C120 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Sh3rf3Q8C120 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Sh3rf3Q8C120 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
Sh3rf3Q8C120 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Sh3rf3Q8C120 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Sh3rf3Q8C120 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Sh3rf3Q8C120 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
Sh3rf3Q8C120 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC26.9■■□□□ 1.9
Sh3rf3Q8C120 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
Sh3rf3Q8C120 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC26.89■■□□□ 1.9
Sh3rf3Q8C120 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
Sh3rf3Q8C120 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Sh3rf3Q8C120 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Sh3rf3Q8C120 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Sh3rf3Q8C120 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Sh3rf3Q8C120 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Sh3rf3Q8C120 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Sh3rf3Q8C120 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Sh3rf3Q8C120 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Sh3rf3Q8C120 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Sh3rf3Q8C120 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26.79■■□□□ 1.88
Sh3rf3Q8C120 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC26.78■■□□□ 1.88
Sh3rf3Q8C120 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Sh3rf3Q8C120 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC26.74■■□□□ 1.87
Sh3rf3Q8C120 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
Sh3rf3Q8C120 Peli2-204ENSMUST00000226513 1320 ntBASIC26.73■■□□□ 1.87
Sh3rf3Q8C120 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Sh3rf3Q8C120 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC26.71■■□□□ 1.87
Sh3rf3Q8C120 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Sh3rf3Q8C120 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Sh3rf3Q8C120 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Sh3rf3Q8C120 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
Sh3rf3Q8C120 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Sh3rf3Q8C120 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Sh3rf3Q8C120 Gm24804-201ENSMUST00000174982 85 ntBASIC26.69■■□□□ 1.86
Sh3rf3Q8C120 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
Sh3rf3Q8C120 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC26.67■■□□□ 1.86
Sh3rf3Q8C120 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
Sh3rf3Q8C120 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC26.66■■□□□ 1.86
Sh3rf3Q8C120 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Sh3rf3Q8C120 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Sh3rf3Q8C120 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.86
Sh3rf3Q8C120 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
Sh3rf3Q8C120 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Sh3rf3Q8C120 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Sh3rf3Q8C120 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Sh3rf3Q8C120 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Sh3rf3Q8C120 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Sh3rf3Q8C120 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Sh3rf3Q8C120 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC26.57■■□□□ 1.84
Sh3rf3Q8C120 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Sh3rf3Q8C120 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Sh3rf3Q8C120 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Sh3rf3Q8C120 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Sh3rf3Q8C120 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC26.55■■□□□ 1.84
Sh3rf3Q8C120 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Sh3rf3Q8C120 Zxda-201ENSMUST00000117281 2621 ntBASIC26.53■■□□□ 1.84
Sh3rf3Q8C120 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Sh3rf3Q8C120 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC26.51■■□□□ 1.83
Sh3rf3Q8C120 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Sh3rf3Q8C120 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC26.5■■□□□ 1.83
Sh3rf3Q8C120 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Sh3rf3Q8C120 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Sh3rf3Q8C120 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
Sh3rf3Q8C120 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC26.47■■□□□ 1.83
Sh3rf3Q8C120 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
Sh3rf3Q8C120 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Sh3rf3Q8C120 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Retrieved 100 of 76,532 protein–RNA pairs in 8.3 ms