Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trav3-1Q5R1I8 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav3-1Q5R1I8 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav3-1Q5R1I8 Gm25239-201ENSMUST00000174915 86 ntBASIC17.74■□□□□ 0.43
Trav3-1Q5R1I8 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav3-1Q5R1I8 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trav3-1Q5R1I8 Gm20634-201ENSMUST00000090779 2956 ntBASIC17.74■□□□□ 0.43
Trav3-1Q5R1I8 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav3-1Q5R1I8 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav3-1Q5R1I8 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav3-1Q5R1I8 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav3-1Q5R1I8 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav3-1Q5R1I8 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav3-1Q5R1I8 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav3-1Q5R1I8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trav3-1Q5R1I8 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
Trav3-1Q5R1I8 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav3-1Q5R1I8 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav3-1Q5R1I8 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav3-1Q5R1I8 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav3-1Q5R1I8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trav3-1Q5R1I8 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trav3-1Q5R1I8 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav3-1Q5R1I8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav3-1Q5R1I8 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav3-1Q5R1I8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav3-1Q5R1I8 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav3-1Q5R1I8 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trav3-1Q5R1I8 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Trav3-1Q5R1I8 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav3-1Q5R1I8 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC17.64■□□□□ 0.41
Trav3-1Q5R1I8 Gm2415-204ENSMUST00000190235 2004 ntBASIC17.63■□□□□ 0.41
Trav3-1Q5R1I8 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav3-1Q5R1I8 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav3-1Q5R1I8 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Trav3-1Q5R1I8 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav3-1Q5R1I8 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav3-1Q5R1I8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav3-1Q5R1I8 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav3-1Q5R1I8 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav3-1Q5R1I8 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Trav3-1Q5R1I8 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Trav3-1Q5R1I8 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav3-1Q5R1I8 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Trav3-1Q5R1I8 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav3-1Q5R1I8 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav3-1Q5R1I8 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav3-1Q5R1I8 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Trav3-1Q5R1I8 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC17.54■□□□□ 0.4
Trav3-1Q5R1I8 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav3-1Q5R1I8 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav3-1Q5R1I8 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav3-1Q5R1I8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trav3-1Q5R1I8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC17.52■□□□□ 0.4
Trav3-1Q5R1I8 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav3-1Q5R1I8 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav3-1Q5R1I8 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav3-1Q5R1I8 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav3-1Q5R1I8 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav3-1Q5R1I8 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav3-1Q5R1I8 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trav3-1Q5R1I8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC17.49■□□□□ 0.39
Trav3-1Q5R1I8 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav3-1Q5R1I8 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav3-1Q5R1I8 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav3-1Q5R1I8 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav3-1Q5R1I8 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Trav3-1Q5R1I8 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav3-1Q5R1I8 AC153890.1-201ENSMUST00000220021 2469 ntBASIC17.43■□□□□ 0.38
Trav3-1Q5R1I8 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Trav3-1Q5R1I8 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav3-1Q5R1I8 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav3-1Q5R1I8 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.38
Trav3-1Q5R1I8 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Trav3-1Q5R1I8 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav3-1Q5R1I8 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav3-1Q5R1I8 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trav3-1Q5R1I8 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav3-1Q5R1I8 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Trav3-1Q5R1I8 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav3-1Q5R1I8 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav3-1Q5R1I8 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav3-1Q5R1I8 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav3-1Q5R1I8 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC17.35■□□□□ 0.37
Trav3-1Q5R1I8 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav3-1Q5R1I8 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav3-1Q5R1I8 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Trav3-1Q5R1I8 Fezf2-202ENSMUST00000224023 1917 ntBASIC17.34■□□□□ 0.37
Trav3-1Q5R1I8 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav3-1Q5R1I8 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trav3-1Q5R1I8 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trav3-1Q5R1I8 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav3-1Q5R1I8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav3-1Q5R1I8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav3-1Q5R1I8 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav3-1Q5R1I8 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav3-1Q5R1I8 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav3-1Q5R1I8 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav3-1Q5R1I8 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC17.27■□□□□ 0.36
Trav3-1Q5R1I8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC17.27■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms