Protein–RNA interactions for Protein: P0C6B2

Ptcra, Pre T-cell antigen receptor alpha, mousemouse

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PtcraP0C6B2 Gm2415-204ENSMUST00000190235 2004 ntBASIC22.93■■□□□ 1.26
PtcraP0C6B2 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PtcraP0C6B2 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
PtcraP0C6B2 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
PtcraP0C6B2 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PtcraP0C6B2 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PtcraP0C6B2 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
PtcraP0C6B2 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
PtcraP0C6B2 Gm6658-202ENSMUST00000209493 1885 ntBASIC22.78■■□□□ 1.24
PtcraP0C6B2 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PtcraP0C6B2 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PtcraP0C6B2 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
PtcraP0C6B2 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC22.74■■□□□ 1.23
PtcraP0C6B2 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
PtcraP0C6B2 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
PtcraP0C6B2 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PtcraP0C6B2 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PtcraP0C6B2 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PtcraP0C6B2 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
PtcraP0C6B2 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PtcraP0C6B2 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PtcraP0C6B2 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PtcraP0C6B2 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
PtcraP0C6B2 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PtcraP0C6B2 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
PtcraP0C6B2 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PtcraP0C6B2 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PtcraP0C6B2 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC22.62■■□□□ 1.21
PtcraP0C6B2 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PtcraP0C6B2 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
PtcraP0C6B2 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PtcraP0C6B2 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PtcraP0C6B2 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PtcraP0C6B2 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
PtcraP0C6B2 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PtcraP0C6B2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
PtcraP0C6B2 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PtcraP0C6B2 Peli2-204ENSMUST00000226513 1320 ntBASIC22.56■■□□□ 1.2
PtcraP0C6B2 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC22.55■■□□□ 1.2
PtcraP0C6B2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
PtcraP0C6B2 Gm24804-201ENSMUST00000174982 85 ntBASIC22.54■■□□□ 1.2
PtcraP0C6B2 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PtcraP0C6B2 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
PtcraP0C6B2 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
PtcraP0C6B2 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
PtcraP0C6B2 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
PtcraP0C6B2 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
PtcraP0C6B2 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PtcraP0C6B2 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PtcraP0C6B2 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
PtcraP0C6B2 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC22.46■■□□□ 1.19
PtcraP0C6B2 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
PtcraP0C6B2 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PtcraP0C6B2 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PtcraP0C6B2 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PtcraP0C6B2 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
PtcraP0C6B2 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PtcraP0C6B2 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PtcraP0C6B2 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
PtcraP0C6B2 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC22.39■■□□□ 1.17
PtcraP0C6B2 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC22.37■■□□□ 1.17
PtcraP0C6B2 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC22.37■■□□□ 1.17
PtcraP0C6B2 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PtcraP0C6B2 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PtcraP0C6B2 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PtcraP0C6B2 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
PtcraP0C6B2 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
PtcraP0C6B2 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PtcraP0C6B2 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PtcraP0C6B2 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PtcraP0C6B2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
PtcraP0C6B2 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PtcraP0C6B2 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC22.32■■□□□ 1.16
PtcraP0C6B2 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC22.32■■□□□ 1.16
PtcraP0C6B2 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PtcraP0C6B2 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
PtcraP0C6B2 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
PtcraP0C6B2 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PtcraP0C6B2 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
PtcraP0C6B2 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC22.29■■□□□ 1.16
PtcraP0C6B2 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC22.29■■□□□ 1.16
PtcraP0C6B2 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
PtcraP0C6B2 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PtcraP0C6B2 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PtcraP0C6B2 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PtcraP0C6B2 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
PtcraP0C6B2 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PtcraP0C6B2 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PtcraP0C6B2 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PtcraP0C6B2 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC22.23■■□□□ 1.15
PtcraP0C6B2 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PtcraP0C6B2 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
PtcraP0C6B2 Gm16148-201ENSMUST00000119653 893 ntBASIC22.22■■□□□ 1.15
PtcraP0C6B2 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PtcraP0C6B2 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
PtcraP0C6B2 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22.21■■□□□ 1.15
PtcraP0C6B2 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PtcraP0C6B2 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
PtcraP0C6B2 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
PtcraP0C6B2 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 66.8 ms