Protein–RNA interactions for Protein: P09022

Hoxa1, Homeobox protein Hox-A1, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa1P09022 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Hoxa1P09022 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Hoxa1P09022 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.97■□□□□ 0.95
Hoxa1P09022 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Hoxa1P09022 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC20.96■□□□□ 0.95
Hoxa1P09022 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Hoxa1P09022 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Hoxa1P09022 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Hoxa1P09022 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Hoxa1P09022 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.94■□□□□ 0.94
Hoxa1P09022 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Hoxa1P09022 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
Hoxa1P09022 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Hoxa1P09022 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.9■□□□□ 0.94
Hoxa1P09022 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC20.89■□□□□ 0.94
Hoxa1P09022 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hoxa1P09022 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Hoxa1P09022 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Hoxa1P09022 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Hoxa1P09022 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hoxa1P09022 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Hoxa1P09022 AC153504.1-201ENSMUST00000218379 2290 ntBASIC20.85■□□□□ 0.93
Hoxa1P09022 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Hoxa1P09022 Gm17082-201ENSMUST00000166043 1091 ntBASIC20.83■□□□□ 0.93
Hoxa1P09022 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
Hoxa1P09022 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Hoxa1P09022 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Hoxa1P09022 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC20.8■□□□□ 0.92
Hoxa1P09022 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Hoxa1P09022 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Hoxa1P09022 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20.79■□□□□ 0.92
Hoxa1P09022 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Hoxa1P09022 Gm27322-201ENSMUST00000184007 104 ntBASIC20.78■□□□□ 0.92
Hoxa1P09022 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Hoxa1P09022 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
Hoxa1P09022 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
Hoxa1P09022 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Hoxa1P09022 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.75■□□□□ 0.91
Hoxa1P09022 AC166822.3-201ENSMUST00000227394 661 ntBASIC20.75■□□□□ 0.91
Hoxa1P09022 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Hoxa1P09022 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.75■□□□□ 0.91
Hoxa1P09022 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hoxa1P09022 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Hoxa1P09022 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hoxa1P09022 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hoxa1P09022 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Hoxa1P09022 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Hoxa1P09022 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
Hoxa1P09022 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Hoxa1P09022 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Hoxa1P09022 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Hoxa1P09022 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
Hoxa1P09022 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Hoxa1P09022 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.69■□□□□ 0.9
Hoxa1P09022 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hoxa1P09022 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hoxa1P09022 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Hoxa1P09022 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Hoxa1P09022 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Hoxa1P09022 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
Hoxa1P09022 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Hoxa1P09022 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Hoxa1P09022 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Hoxa1P09022 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Hoxa1P09022 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hoxa1P09022 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hoxa1P09022 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hoxa1P09022 Zxda-201ENSMUST00000117281 2621 ntBASIC20.61■□□□□ 0.89
Hoxa1P09022 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Hoxa1P09022 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hoxa1P09022 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Hoxa1P09022 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Hoxa1P09022 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Hoxa1P09022 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Hoxa1P09022 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hoxa1P09022 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hoxa1P09022 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hoxa1P09022 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Hoxa1P09022 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Hoxa1P09022 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Hoxa1P09022 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Hoxa1P09022 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hoxa1P09022 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Hoxa1P09022 Gm26115-201ENSMUST00000175605 87 ntBASIC20.5■□□□□ 0.87
Hoxa1P09022 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Hoxa1P09022 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Hoxa1P09022 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Hoxa1P09022 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Hoxa1P09022 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Hoxa1P09022 Gm8109-201ENSMUST00000194076 746 ntBASIC20.46■□□□□ 0.87
Hoxa1P09022 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Hoxa1P09022 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Hoxa1P09022 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Hoxa1P09022 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Hoxa1P09022 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Hoxa1P09022 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Hoxa1P09022 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Hoxa1P09022 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.43■□□□□ 0.86
Hoxa1P09022 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Hoxa1P09022 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC20.4■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms