Protein–RNA interactions for Protein: A0A0G2JDP3

Trav9n-2, T cell receptor alpha variable 9D-2 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9n-2A0A0G2JDP3 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
Trav9n-2A0A0G2JDP3 Gm26115-201ENSMUST00000175605 87 ntBASIC18.88■□□□□ 0.61
Trav9n-2A0A0G2JDP3 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Trav9n-2A0A0G2JDP3 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Trav9n-2A0A0G2JDP3 Gm6658-202ENSMUST00000209493 1885 ntBASIC18.87■□□□□ 0.61
Trav9n-2A0A0G2JDP3 Gm8109-201ENSMUST00000194076 746 ntBASIC18.86■□□□□ 0.61
Trav9n-2A0A0G2JDP3 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC18.86■□□□□ 0.61
Trav9n-2A0A0G2JDP3 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav9n-2A0A0G2JDP3 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC18.85■□□□□ 0.61
Trav9n-2A0A0G2JDP3 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav9n-2A0A0G2JDP3 AC166822.3-201ENSMUST00000227394 661 ntBASIC18.84■□□□□ 0.61
Trav9n-2A0A0G2JDP3 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trav9n-2A0A0G2JDP3 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trav9n-2A0A0G2JDP3 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trav9n-2A0A0G2JDP3 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav9n-2A0A0G2JDP3 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Trav9n-2A0A0G2JDP3 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav9n-2A0A0G2JDP3 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav9n-2A0A0G2JDP3 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav9n-2A0A0G2JDP3 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav9n-2A0A0G2JDP3 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC18.7■□□□□ 0.58
Trav9n-2A0A0G2JDP3 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav9n-2A0A0G2JDP3 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav9n-2A0A0G2JDP3 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav9n-2A0A0G2JDP3 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav9n-2A0A0G2JDP3 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav9n-2A0A0G2JDP3 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav9n-2A0A0G2JDP3 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav9n-2A0A0G2JDP3 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Trav9n-2A0A0G2JDP3 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav9n-2A0A0G2JDP3 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav9n-2A0A0G2JDP3 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Trav9n-2A0A0G2JDP3 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav9n-2A0A0G2JDP3 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav9n-2A0A0G2JDP3 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
Trav9n-2A0A0G2JDP3 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trav9n-2A0A0G2JDP3 AC153504.1-201ENSMUST00000218379 2290 ntBASIC18.6■□□□□ 0.57
Trav9n-2A0A0G2JDP3 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC18.58■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav9n-2A0A0G2JDP3 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC18.5■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav9n-2A0A0G2JDP3 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC18.46■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC18.46■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav9n-2A0A0G2JDP3 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC18.41■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC18.41■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Peli2-204ENSMUST00000226513 1320 ntBASIC18.41■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav9n-2A0A0G2JDP3 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC18.35■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Gm24804-201ENSMUST00000174982 85 ntBASIC18.35■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC18.34■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
Trav9n-2A0A0G2JDP3 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trav9n-2A0A0G2JDP3 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trav9n-2A0A0G2JDP3 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms