Protein–RNA interactions for Protein: A0A0B4J1P8

Trbv13-1, T cell receptor beta, variable 13-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv13-1A0A0B4J1P8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv13-1A0A0B4J1P8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv13-1A0A0B4J1P8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv13-1A0A0B4J1P8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv13-1A0A0B4J1P8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trbv13-1A0A0B4J1P8 Gm2415-204ENSMUST00000190235 2004 ntBASIC19.13■□□□□ 0.65
Trbv13-1A0A0B4J1P8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trbv13-1A0A0B4J1P8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC19.12■□□□□ 0.65
Trbv13-1A0A0B4J1P8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv13-1A0A0B4J1P8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv13-1A0A0B4J1P8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trbv13-1A0A0B4J1P8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv13-1A0A0B4J1P8 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trbv13-1A0A0B4J1P8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Trbv13-1A0A0B4J1P8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Trbv13-1A0A0B4J1P8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.08■□□□□ 0.64
Trbv13-1A0A0B4J1P8 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trbv13-1A0A0B4J1P8 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trbv13-1A0A0B4J1P8 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv13-1A0A0B4J1P8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trbv13-1A0A0B4J1P8 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trbv13-1A0A0B4J1P8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv13-1A0A0B4J1P8 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trbv13-1A0A0B4J1P8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trbv13-1A0A0B4J1P8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trbv13-1A0A0B4J1P8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trbv13-1A0A0B4J1P8 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trbv13-1A0A0B4J1P8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trbv13-1A0A0B4J1P8 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trbv13-1A0A0B4J1P8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trbv13-1A0A0B4J1P8 Mipep-204ENSMUST00000225043 1548 ntBASIC18.97■□□□□ 0.63
Trbv13-1A0A0B4J1P8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Gm6658-202ENSMUST00000209493 1885 ntBASIC18.95■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Zfp131-205ENSMUST00000223812 663 ntBASIC18.93■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Trbv13-1A0A0B4J1P8 Gm16148-201ENSMUST00000119653 893 ntBASIC18.88■□□□□ 0.61
Trbv13-1A0A0B4J1P8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trbv13-1A0A0B4J1P8 Peli2-204ENSMUST00000226513 1320 ntBASIC18.86■□□□□ 0.61
Trbv13-1A0A0B4J1P8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
Trbv13-1A0A0B4J1P8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trbv13-1A0A0B4J1P8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Trbv13-1A0A0B4J1P8 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Trbv13-1A0A0B4J1P8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trbv13-1A0A0B4J1P8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv13-1A0A0B4J1P8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC18.81■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC18.81■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC18.81■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC18.79■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trbv13-1A0A0B4J1P8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Trbv13-1A0A0B4J1P8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv13-1A0A0B4J1P8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv13-1A0A0B4J1P8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv13-1A0A0B4J1P8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trbv13-1A0A0B4J1P8 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC18.76■□□□□ 0.59
Trbv13-1A0A0B4J1P8 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv13-1A0A0B4J1P8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trbv13-1A0A0B4J1P8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trbv13-1A0A0B4J1P8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC18.72■□□□□ 0.59
Trbv13-1A0A0B4J1P8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv13-1A0A0B4J1P8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trbv13-1A0A0B4J1P8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC18.72■□□□□ 0.59
Trbv13-1A0A0B4J1P8 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC18.7■□□□□ 0.58
Trbv13-1A0A0B4J1P8 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Trbv13-1A0A0B4J1P8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
Trbv13-1A0A0B4J1P8 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv13-1A0A0B4J1P8 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trbv13-1A0A0B4J1P8 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trbv13-1A0A0B4J1P8 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv13-1A0A0B4J1P8 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Trbv13-1A0A0B4J1P8 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv13-1A0A0B4J1P8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trbv13-1A0A0B4J1P8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv13-1A0A0B4J1P8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trbv13-1A0A0B4J1P8 Zxda-201ENSMUST00000117281 2621 ntBASIC18.63■□□□□ 0.57
Trbv13-1A0A0B4J1P8 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv13-1A0A0B4J1P8 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trbv13-1A0A0B4J1P8 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC18.61■□□□□ 0.57
Trbv13-1A0A0B4J1P8 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC18.61■□□□□ 0.57
Trbv13-1A0A0B4J1P8 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms