Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.24■□□□□ 0.99
Shkbp1Q6P7W2 AC164629.5-201ENSMUST00000220387 632 ntBASIC21.24■□□□□ 0.99
Shkbp1Q6P7W2 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Shkbp1Q6P7W2 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 Gm10493-201ENSMUST00000097270 612 ntBASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Shkbp1Q6P7W2 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shkbp1Q6P7W2 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC21.22■□□□□ 0.99
Shkbp1Q6P7W2 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.22■□□□□ 0.99
Shkbp1Q6P7W2 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Shkbp1Q6P7W2 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shkbp1Q6P7W2 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shkbp1Q6P7W2 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Shkbp1Q6P7W2 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Shkbp1Q6P7W2 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shkbp1Q6P7W2 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.21■□□□□ 0.99
Shkbp1Q6P7W2 Gm5297-201ENSMUST00000198555 1171 ntBASIC21.21■□□□□ 0.99
Shkbp1Q6P7W2 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.21■□□□□ 0.99
Shkbp1Q6P7W2 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shkbp1Q6P7W2 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shkbp1Q6P7W2 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Shkbp1Q6P7W2 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shkbp1Q6P7W2 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shkbp1Q6P7W2 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Shkbp1Q6P7W2 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shkbp1Q6P7W2 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shkbp1Q6P7W2 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Shkbp1Q6P7W2 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC21.2■□□□□ 0.98
Shkbp1Q6P7W2 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Gm26571-201ENSMUST00000181399 666 ntBASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Shkbp1Q6P7W2 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Shkbp1Q6P7W2 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Shkbp1Q6P7W2 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Shkbp1Q6P7W2 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shkbp1Q6P7W2 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shkbp1Q6P7W2 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shkbp1Q6P7W2 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shkbp1Q6P7W2 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shkbp1Q6P7W2 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shkbp1Q6P7W2 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shkbp1Q6P7W2 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shkbp1Q6P7W2 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Shkbp1Q6P7W2 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Shkbp1Q6P7W2 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.14■□□□□ 0.97
Shkbp1Q6P7W2 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shkbp1Q6P7W2 Mir6236-201ENSMUST00000184437 123 ntBASIC21.14■□□□□ 0.97
Shkbp1Q6P7W2 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Shkbp1Q6P7W2 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Shkbp1Q6P7W2 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 78.1 ms