Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf220Q6PDX6 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rnf220Q6PDX6 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Rnf220Q6PDX6 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf220Q6PDX6 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Rnf220Q6PDX6 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf220Q6PDX6 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf220Q6PDX6 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Rnf220Q6PDX6 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf220Q6PDX6 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf220Q6PDX6 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Rnf220Q6PDX6 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Rnf220Q6PDX6 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC19.4■□□□□ 0.7
Rnf220Q6PDX6 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.39■□□□□ 0.7
Rnf220Q6PDX6 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
Rnf220Q6PDX6 Gm22567-201ENSMUST00000175542 342 ntBASIC19.39■□□□□ 0.69
Rnf220Q6PDX6 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC19.39■□□□□ 0.69
Rnf220Q6PDX6 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf220Q6PDX6 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC19.39■□□□□ 0.69
Rnf220Q6PDX6 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf220Q6PDX6 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf220Q6PDX6 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Rnf220Q6PDX6 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf220Q6PDX6 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf220Q6PDX6 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf220Q6PDX6 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Rnf220Q6PDX6 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
Rnf220Q6PDX6 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf220Q6PDX6 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf220Q6PDX6 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Rnf220Q6PDX6 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Rnf220Q6PDX6 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
Rnf220Q6PDX6 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf220Q6PDX6 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC19.36■□□□□ 0.69
Rnf220Q6PDX6 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.36■□□□□ 0.69
Rnf220Q6PDX6 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.36■□□□□ 0.69
Rnf220Q6PDX6 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf220Q6PDX6 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf220Q6PDX6 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Rnf220Q6PDX6 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf220Q6PDX6 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Rnf220Q6PDX6 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf220Q6PDX6 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf220Q6PDX6 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf220Q6PDX6 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf220Q6PDX6 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf220Q6PDX6 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Rnf220Q6PDX6 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf220Q6PDX6 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf220Q6PDX6 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf220Q6PDX6 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Rnf220Q6PDX6 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Rnf220Q6PDX6 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Rnf220Q6PDX6 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
Rnf220Q6PDX6 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Rnf220Q6PDX6 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Rnf220Q6PDX6 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.33■□□□□ 0.69
Rnf220Q6PDX6 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rnf220Q6PDX6 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Rnf220Q6PDX6 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Rnf220Q6PDX6 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf220Q6PDX6 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf220Q6PDX6 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Rnf220Q6PDX6 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf220Q6PDX6 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf220Q6PDX6 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Rnf220Q6PDX6 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf220Q6PDX6 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Rnf220Q6PDX6 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf220Q6PDX6 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf220Q6PDX6 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.32■□□□□ 0.68
Rnf220Q6PDX6 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Rnf220Q6PDX6 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Rnf220Q6PDX6 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms