Protein–RNA interactions for Protein: P32958

Rom1, Rod outer segment membrane protein 1, mousemouse

Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rom1P32958 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rom1P32958 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Rom1P32958 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Rom1P32958 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rom1P32958 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rom1P32958 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rom1P32958 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rom1P32958 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rom1P32958 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
Rom1P32958 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC16.34■□□□□ 0.21
Rom1P32958 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Rom1P32958 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Rom1P32958 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC16.34■□□□□ 0.21
Rom1P32958 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Rom1P32958 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Rom1P32958 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC16.33■□□□□ 0.2
Rom1P32958 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Rom1P32958 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Rom1P32958 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Rom1P32958 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC16.32■□□□□ 0.2
Rom1P32958 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Rom1P32958 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rom1P32958 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rom1P32958 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rom1P32958 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rom1P32958 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Rom1P32958 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rom1P32958 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Rom1P32958 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Rom1P32958 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Rom1P32958 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rom1P32958 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC16.31■□□□□ 0.2
Rom1P32958 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rom1P32958 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rom1P32958 Gm7432-201ENSMUST00000210343 879 ntBASIC16.31■□□□□ 0.2
Rom1P32958 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rom1P32958 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rom1P32958 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Rom1P32958 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rom1P32958 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Rom1P32958 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC16.3■□□□□ 0.2
Rom1P32958 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC16.3■□□□□ 0.2
Rom1P32958 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Rom1P32958 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rom1P32958 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rom1P32958 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rom1P32958 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Rom1P32958 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC16.3■□□□□ 0.2
Rom1P32958 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rom1P32958 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Rom1P32958 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC16.3■□□□□ 0.2
Rom1P32958 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Rom1P32958 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC16.29■□□□□ 0.2
Rom1P32958 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rom1P32958 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rom1P32958 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Rom1P32958 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Rom1P32958 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rom1P32958 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rom1P32958 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rom1P32958 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rom1P32958 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Rom1P32958 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rom1P32958 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Rom1P32958 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Rom1P32958 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC16.28■□□□□ 0.2
Rom1P32958 Gm11599-201ENSMUST00000118720 878 ntBASIC16.28■□□□□ 0.2
Rom1P32958 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rom1P32958 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Rom1P32958 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rom1P32958 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Rom1P32958 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Rom1P32958 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rom1P32958 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rom1P32958 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rom1P32958 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rom1P32958 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms