Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trbv1A0A0B4J1G7 Gm5112-201ENSMUST00000204407 2368 ntBASIC16.09■□□□□ 0.17
Trbv1A0A0B4J1G7 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv1A0A0B4J1G7 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv1A0A0B4J1G7 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv1A0A0B4J1G7 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC16.09■□□□□ 0.17
Trbv1A0A0B4J1G7 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trbv1A0A0B4J1G7 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Trbv1A0A0B4J1G7 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Trbv1A0A0B4J1G7 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trbv1A0A0B4J1G7 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC16.08■□□□□ 0.17
Trbv1A0A0B4J1G7 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC16.08■□□□□ 0.17
Trbv1A0A0B4J1G7 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.17
Trbv1A0A0B4J1G7 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trbv1A0A0B4J1G7 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trbv1A0A0B4J1G7 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trbv1A0A0B4J1G7 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Trbv1A0A0B4J1G7 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trbv1A0A0B4J1G7 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trbv1A0A0B4J1G7 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trbv1A0A0B4J1G7 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv1A0A0B4J1G7 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC16.07■□□□□ 0.16
Trbv1A0A0B4J1G7 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv1A0A0B4J1G7 Gm14523-201ENSMUST00000117260 558 ntBASIC16.07■□□□□ 0.16
Trbv1A0A0B4J1G7 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC16.07■□□□□ 0.16
Trbv1A0A0B4J1G7 AC151971.4-201ENSMUST00000214717 704 ntBASIC16.07■□□□□ 0.16
Trbv1A0A0B4J1G7 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv1A0A0B4J1G7 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trbv1A0A0B4J1G7 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Gm27502-201ENSMUST00000183495 199 ntBASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trbv1A0A0B4J1G7 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Gm7332-201ENSMUST00000118351 454 ntBASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trbv1A0A0B4J1G7 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
Trbv1A0A0B4J1G7 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Trbv1A0A0B4J1G7 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trbv1A0A0B4J1G7 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC16.04■□□□□ 0.16
Trbv1A0A0B4J1G7 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trbv1A0A0B4J1G7 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trbv1A0A0B4J1G7 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trbv1A0A0B4J1G7 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Trbv1A0A0B4J1G7 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trbv1A0A0B4J1G7 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trbv1A0A0B4J1G7 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trbv1A0A0B4J1G7 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trbv1A0A0B4J1G7 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Trbv1A0A0B4J1G7 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC16.03■□□□□ 0.16
Trbv1A0A0B4J1G7 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trbv1A0A0B4J1G7 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trbv1A0A0B4J1G7 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trbv1A0A0B4J1G7 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trbv1A0A0B4J1G7 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Gm12366-201ENSMUST00000121722 873 ntBASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Gm5786-201ENSMUST00000085368 882 ntBASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC16.02■□□□□ 0.16
Trbv1A0A0B4J1G7 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Trbv1A0A0B4J1G7 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC16.02■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms