Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 Gm44428-201ENSMUST00000204474 874 ntBASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 Golph3-202ENSMUST00000226517 2359 ntBASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trbv1A0A0B4J1G7 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv1A0A0B4J1G7 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv1A0A0B4J1G7 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trbv1A0A0B4J1G7 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv1A0A0B4J1G7 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv1A0A0B4J1G7 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv1A0A0B4J1G7 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv1A0A0B4J1G7 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv1A0A0B4J1G7 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trbv1A0A0B4J1G7 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv1A0A0B4J1G7 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv1A0A0B4J1G7 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC16.28■□□□□ 0.2
Trbv1A0A0B4J1G7 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Trbv1A0A0B4J1G7 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv1A0A0B4J1G7 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv1A0A0B4J1G7 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trbv1A0A0B4J1G7 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trbv1A0A0B4J1G7 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trbv1A0A0B4J1G7 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trbv1A0A0B4J1G7 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC16.27■□□□□ 0.2
Trbv1A0A0B4J1G7 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trbv1A0A0B4J1G7 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
Trbv1A0A0B4J1G7 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trbv1A0A0B4J1G7 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Kdm3b-204ENSMUST00000224715 2032 ntBASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trbv1A0A0B4J1G7 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv1A0A0B4J1G7 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC16.25■□□□□ 0.19
Trbv1A0A0B4J1G7 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Trbv1A0A0B4J1G7 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv1A0A0B4J1G7 Gm7199-201ENSMUST00000118327 1485 ntBASIC16.25■□□□□ 0.19
Trbv1A0A0B4J1G7 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv1A0A0B4J1G7 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv1A0A0B4J1G7 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trbv1A0A0B4J1G7 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trbv1A0A0B4J1G7 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Trbv1A0A0B4J1G7 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trbv1A0A0B4J1G7 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trbv1A0A0B4J1G7 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trbv1A0A0B4J1G7 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Trbv1A0A0B4J1G7 Gm11175-201ENSMUST00000116172 543 ntBASIC16.21■□□□□ 0.19
Trbv1A0A0B4J1G7 Mir6538-201ENSMUST00000183713 110 ntBASIC16.21■□□□□ 0.19
Trbv1A0A0B4J1G7 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trbv1A0A0B4J1G7 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trbv1A0A0B4J1G7 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Trbv1A0A0B4J1G7 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trbv1A0A0B4J1G7 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Trbv1A0A0B4J1G7 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Trbv1A0A0B4J1G7 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC16.2■□□□□ 0.18
Trbv1A0A0B4J1G7 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms