Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Prpf40aQ9R1C7 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Prpf40aQ9R1C7 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
Prpf40aQ9R1C7 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC23.11■■□□□ 1.29
Prpf40aQ9R1C7 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Prpf40aQ9R1C7 Gm37415-201ENSMUST00000192265 2054 ntBASIC23.1■■□□□ 1.29
Prpf40aQ9R1C7 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC23.1■■□□□ 1.29
Prpf40aQ9R1C7 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Prpf40aQ9R1C7 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Prpf40aQ9R1C7 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Prpf40aQ9R1C7 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
Prpf40aQ9R1C7 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Prpf40aQ9R1C7 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Prpf40aQ9R1C7 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC23.09■■□□□ 1.29
Prpf40aQ9R1C7 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Prpf40aQ9R1C7 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Prpf40aQ9R1C7 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC23.08■■□□□ 1.29
Prpf40aQ9R1C7 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC23.08■■□□□ 1.29
Prpf40aQ9R1C7 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Prpf40aQ9R1C7 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Prpf40aQ9R1C7 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Prpf40aQ9R1C7 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Prpf40aQ9R1C7 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC23.08■■□□□ 1.28
Prpf40aQ9R1C7 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Prpf40aQ9R1C7 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC23.07■■□□□ 1.28
Prpf40aQ9R1C7 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Prpf40aQ9R1C7 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC23.06■■□□□ 1.28
Prpf40aQ9R1C7 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
Prpf40aQ9R1C7 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Prpf40aQ9R1C7 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Prpf40aQ9R1C7 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Prpf40aQ9R1C7 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Prpf40aQ9R1C7 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC23.05■■□□□ 1.28
Prpf40aQ9R1C7 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
Prpf40aQ9R1C7 Gm13238-201ENSMUST00000117655 780 ntBASIC23.05■■□□□ 1.28
Prpf40aQ9R1C7 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Prpf40aQ9R1C7 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Prpf40aQ9R1C7 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Prpf40aQ9R1C7 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC23.04■■□□□ 1.28
Prpf40aQ9R1C7 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Prpf40aQ9R1C7 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC23.03■■□□□ 1.28
Prpf40aQ9R1C7 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Prpf40aQ9R1C7 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Prpf40aQ9R1C7 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Prpf40aQ9R1C7 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC23.03■■□□□ 1.28
Prpf40aQ9R1C7 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Prpf40aQ9R1C7 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Prpf40aQ9R1C7 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Prpf40aQ9R1C7 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Prpf40aQ9R1C7 Gm42418-201ENSMUST00000182010 1831 ntBASIC23.02■■□□□ 1.28
Prpf40aQ9R1C7 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Prpf40aQ9R1C7 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Prpf40aQ9R1C7 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC23.01■■□□□ 1.27
Prpf40aQ9R1C7 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Prpf40aQ9R1C7 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC23.01■■□□□ 1.27
Prpf40aQ9R1C7 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Prpf40aQ9R1C7 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
Prpf40aQ9R1C7 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC23■■□□□ 1.27
Prpf40aQ9R1C7 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Prpf40aQ9R1C7 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC23■■□□□ 1.27
Prpf40aQ9R1C7 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC23■■□□□ 1.27
Prpf40aQ9R1C7 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC23■■□□□ 1.27
Prpf40aQ9R1C7 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Prpf40aQ9R1C7 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
Prpf40aQ9R1C7 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Prpf40aQ9R1C7 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Prpf40aQ9R1C7 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Prpf40aQ9R1C7 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Prpf40aQ9R1C7 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Prpf40aQ9R1C7 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC22.99■■□□□ 1.27
Prpf40aQ9R1C7 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Prpf40aQ9R1C7 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Prpf40aQ9R1C7 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Prpf40aQ9R1C7 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Prpf40aQ9R1C7 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Prpf40aQ9R1C7 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC22.98■■□□□ 1.27
Prpf40aQ9R1C7 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
Prpf40aQ9R1C7 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC22.98■■□□□ 1.27
Prpf40aQ9R1C7 Gm28536-201ENSMUST00000190971 1317 ntBASIC22.98■■□□□ 1.27
Prpf40aQ9R1C7 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Prpf40aQ9R1C7 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Prpf40aQ9R1C7 Gm38160-201ENSMUST00000193090 2499 ntBASIC22.97■■□□□ 1.27
Prpf40aQ9R1C7 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Prpf40aQ9R1C7 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC22.97■■□□□ 1.27
Prpf40aQ9R1C7 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC22.97■■□□□ 1.27
Prpf40aQ9R1C7 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Prpf40aQ9R1C7 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Prpf40aQ9R1C7 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Prpf40aQ9R1C7 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Prpf40aQ9R1C7 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Prpf40aQ9R1C7 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 63.5 ms