Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Sh3rf2Q8BZT2 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Sh3rf2Q8BZT2 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Sh3rf2Q8BZT2 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
Sh3rf2Q8BZT2 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC21.44■■□□□ 1.02
Sh3rf2Q8BZT2 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Sh3rf2Q8BZT2 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Sh3rf2Q8BZT2 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Sh3rf2Q8BZT2 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC21.43■■□□□ 1.02
Sh3rf2Q8BZT2 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
Sh3rf2Q8BZT2 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Sh3rf2Q8BZT2 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Sh3rf2Q8BZT2 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Sh3rf2Q8BZT2 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Sh3rf2Q8BZT2 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Sh3rf2Q8BZT2 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Sh3rf2Q8BZT2 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC21.42■■□□□ 1.02
Sh3rf2Q8BZT2 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Sh3rf2Q8BZT2 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.41■■□□□ 1.02
Sh3rf2Q8BZT2 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Sh3rf2Q8BZT2 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC21.41■■□□□ 1.02
Sh3rf2Q8BZT2 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
Sh3rf2Q8BZT2 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Sh3rf2Q8BZT2 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Sh3rf2Q8BZT2 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Sh3rf2Q8BZT2 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Sh3rf2Q8BZT2 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Sh3rf2Q8BZT2 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.4■■□□□ 1.02
Sh3rf2Q8BZT2 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Sh3rf2Q8BZT2 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Sh3rf2Q8BZT2 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC21.39■■□□□ 1.01
Sh3rf2Q8BZT2 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC21.39■■□□□ 1.01
Sh3rf2Q8BZT2 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Sh3rf2Q8BZT2 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Sh3rf2Q8BZT2 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC21.38■■□□□ 1.01
Sh3rf2Q8BZT2 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Sh3rf2Q8BZT2 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Sh3rf2Q8BZT2 AC140930.3-201ENSMUST00000222935 274 ntBASIC21.38■■□□□ 1.01
Sh3rf2Q8BZT2 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Sh3rf2Q8BZT2 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Sh3rf2Q8BZT2 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Sh3rf2Q8BZT2 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Sh3rf2Q8BZT2 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Sh3rf2Q8BZT2 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Sh3rf2Q8BZT2 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC21.37■■□□□ 1.01
Sh3rf2Q8BZT2 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.37■■□□□ 1.01
Sh3rf2Q8BZT2 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC21.37■■□□□ 1.01
Sh3rf2Q8BZT2 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Sh3rf2Q8BZT2 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Sh3rf2Q8BZT2 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Sh3rf2Q8BZT2 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Sh3rf2Q8BZT2 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.36■■□□□ 1.01
Sh3rf2Q8BZT2 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.36■■□□□ 1.01
Sh3rf2Q8BZT2 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Sh3rf2Q8BZT2 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC21.36■■□□□ 1.01
Sh3rf2Q8BZT2 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC21.36■■□□□ 1.01
Sh3rf2Q8BZT2 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Sh3rf2Q8BZT2 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.36■■□□□ 1.01
Sh3rf2Q8BZT2 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Sh3rf2Q8BZT2 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sh3rf2Q8BZT2 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sh3rf2Q8BZT2 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sh3rf2Q8BZT2 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.35■■□□□ 1.01
Sh3rf2Q8BZT2 Golgb1-201ENSMUST00000023534 498 ntBASIC21.35■■□□□ 1.01
Sh3rf2Q8BZT2 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Sh3rf2Q8BZT2 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sh3rf2Q8BZT2 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Sh3rf2Q8BZT2 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Sh3rf2Q8BZT2 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Sh3rf2Q8BZT2 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Sh3rf2Q8BZT2 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Sh3rf2Q8BZT2 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.34■■□□□ 1.01
Sh3rf2Q8BZT2 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC21.34■■□□□ 1.01
Sh3rf2Q8BZT2 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC21.34■■□□□ 1.01
Sh3rf2Q8BZT2 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Sh3rf2Q8BZT2 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Sh3rf2Q8BZT2 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Sh3rf2Q8BZT2 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Sh3rf2Q8BZT2 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Sh3rf2Q8BZT2 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC21.33■■□□□ 1.01
Sh3rf2Q8BZT2 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Sh3rf2Q8BZT2 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1
Sh3rf2Q8BZT2 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
Sh3rf2Q8BZT2 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.32■■□□□ 1
Sh3rf2Q8BZT2 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Sh3rf2Q8BZT2 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC21.32■■□□□ 1
Sh3rf2Q8BZT2 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC21.32■■□□□ 1
Sh3rf2Q8BZT2 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Sh3rf2Q8BZT2 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Sh3rf2Q8BZT2 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC21.31■■□□□ 1
Sh3rf2Q8BZT2 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Sh3rf2Q8BZT2 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC21.31■■□□□ 1
Sh3rf2Q8BZT2 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC21.3■■□□□ 1
Sh3rf2Q8BZT2 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Sh3rf2Q8BZT2 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Sh3rf2Q8BZT2 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.3■■□□□ 1
Sh3rf2Q8BZT2 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.3■■□□□ 1
Sh3rf2Q8BZT2 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.3■■□□□ 1
Sh3rf2Q8BZT2 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Sh3rf2Q8BZT2 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms