Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv1A0A0B4J1G7 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv1A0A0B4J1G7 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv1A0A0B4J1G7 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv1A0A0B4J1G7 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv1A0A0B4J1G7 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC16.5■□□□□ 0.23
Trbv1A0A0B4J1G7 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv1A0A0B4J1G7 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Trbv1A0A0B4J1G7 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC16.49■□□□□ 0.23
Trbv1A0A0B4J1G7 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Trbv1A0A0B4J1G7 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv1A0A0B4J1G7 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv1A0A0B4J1G7 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv1A0A0B4J1G7 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv1A0A0B4J1G7 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv1A0A0B4J1G7 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trbv1A0A0B4J1G7 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv1A0A0B4J1G7 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv1A0A0B4J1G7 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC16.47■□□□□ 0.23
Trbv1A0A0B4J1G7 Gm22567-201ENSMUST00000175542 342 ntBASIC16.47■□□□□ 0.23
Trbv1A0A0B4J1G7 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv1A0A0B4J1G7 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Trbv1A0A0B4J1G7 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv1A0A0B4J1G7 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv1A0A0B4J1G7 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv1A0A0B4J1G7 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trbv1A0A0B4J1G7 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv1A0A0B4J1G7 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv1A0A0B4J1G7 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv1A0A0B4J1G7 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trbv1A0A0B4J1G7 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trbv1A0A0B4J1G7 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv1A0A0B4J1G7 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv1A0A0B4J1G7 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC16.44■□□□□ 0.22
Trbv1A0A0B4J1G7 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv1A0A0B4J1G7 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv1A0A0B4J1G7 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv1A0A0B4J1G7 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv1A0A0B4J1G7 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv1A0A0B4J1G7 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv1A0A0B4J1G7 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC16.44■□□□□ 0.22
Trbv1A0A0B4J1G7 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv1A0A0B4J1G7 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trbv1A0A0B4J1G7 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Trbv1A0A0B4J1G7 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC16.43■□□□□ 0.22
Trbv1A0A0B4J1G7 Gm42418-201ENSMUST00000182010 1831 ntBASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trbv1A0A0B4J1G7 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv1A0A0B4J1G7 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv1A0A0B4J1G7 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv1A0A0B4J1G7 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv1A0A0B4J1G7 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Trbv1A0A0B4J1G7 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC16.41■□□□□ 0.22
Trbv1A0A0B4J1G7 Gm9806-201ENSMUST00000051080 552 ntBASIC16.41■□□□□ 0.22
Trbv1A0A0B4J1G7 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trbv1A0A0B4J1G7 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
Trbv1A0A0B4J1G7 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Scarna2-201ENSMUST00000157560 414 ntBASIC16.4■□□□□ 0.22
Trbv1A0A0B4J1G7 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms