Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Gm27322-201ENSMUST00000184007 104 ntBASIC35.75■■■■□ 3.31
Ubr3Q5U430 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC35.73■■■■□ 3.31
Ubr3Q5U430 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC35.71■■■■□ 3.31
Ubr3Q5U430 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
Ubr3Q5U430 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC35.62■■■■□ 3.29
Ubr3Q5U430 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC35.56■■■■□ 3.28
Ubr3Q5U430 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
Ubr3Q5U430 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC35.54■■■■□ 3.28
Ubr3Q5U430 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
Ubr3Q5U430 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
Ubr3Q5U430 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
Ubr3Q5U430 Zfp131-205ENSMUST00000223812 663 ntBASIC35.48■■■■□ 3.27
Ubr3Q5U430 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC35.43■■■■□ 3.26
Ubr3Q5U430 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
Ubr3Q5U430 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC35.42■■■■□ 3.26
Ubr3Q5U430 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
Ubr3Q5U430 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC35.25■■■■□ 3.23
Ubr3Q5U430 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
Ubr3Q5U430 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
Ubr3Q5U430 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
Ubr3Q5U430 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC35.22■■■■□ 3.23
Ubr3Q5U430 Gm42596-201ENSMUST00000196305 1958 ntBASIC35.22■■■■□ 3.23
Ubr3Q5U430 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
Ubr3Q5U430 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
Ubr3Q5U430 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
Ubr3Q5U430 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
Ubr3Q5U430 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC35.07■■■■□ 3.2
Ubr3Q5U430 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
Ubr3Q5U430 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC35.05■■■■□ 3.2
Ubr3Q5U430 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC35.01■■■■□ 3.19
Ubr3Q5U430 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
Ubr3Q5U430 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC34.99■■■■□ 3.19
Ubr3Q5U430 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
Ubr3Q5U430 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
Ubr3Q5U430 AC166822.3-201ENSMUST00000227394 661 ntBASIC34.97■■■■□ 3.19
Ubr3Q5U430 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC34.92■■■■□ 3.18
Ubr3Q5U430 CT025624.2-201ENSMUST00000223609 1909 ntBASIC34.91■■■■□ 3.18
Ubr3Q5U430 Gm10524-201ENSMUST00000181931 1893 ntBASIC34.89■■■■□ 3.18
Ubr3Q5U430 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
Ubr3Q5U430 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC34.86■■■■□ 3.17
Ubr3Q5U430 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
Ubr3Q5U430 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC34.84■■■■□ 3.17
Ubr3Q5U430 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
Ubr3Q5U430 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC34.82■■■■□ 3.17
Ubr3Q5U430 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC34.82■■■■□ 3.17
Ubr3Q5U430 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
Ubr3Q5U430 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
Ubr3Q5U430 AL845457.1-201ENSMUST00000197244 68 ntBASIC34.78■■■■□ 3.16
Ubr3Q5U430 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
Ubr3Q5U430 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC34.72■■■■□ 3.15
Ubr3Q5U430 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC34.72■■■■□ 3.15
Ubr3Q5U430 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC34.69■■■■□ 3.14
Ubr3Q5U430 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC34.65■■■■□ 3.14
Ubr3Q5U430 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34.64■■■■□ 3.14
Ubr3Q5U430 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC34.63■■■■□ 3.13
Ubr3Q5U430 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
Ubr3Q5U430 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
Ubr3Q5U430 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC34.62■■■■□ 3.13
Ubr3Q5U430 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
Ubr3Q5U430 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC34.59■■■■□ 3.13
Ubr3Q5U430 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC34.56■■■■□ 3.12
Ubr3Q5U430 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC34.55■■■■□ 3.12
Ubr3Q5U430 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC34.5■■■■□ 3.11
Ubr3Q5U430 Gm16148-201ENSMUST00000119653 893 ntBASIC34.34■■■■□ 3.09
Ubr3Q5U430 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
Ubr3Q5U430 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC34.31■■■■□ 3.08
Ubr3Q5U430 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC34.31■■■■□ 3.08
Ubr3Q5U430 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
Ubr3Q5U430 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC34.29■■■■□ 3.08
Ubr3Q5U430 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC34.28■■■■□ 3.08
Ubr3Q5U430 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC34.26■■■■□ 3.08
Ubr3Q5U430 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC34.25■■■■□ 3.07
Ubr3Q5U430 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
Ubr3Q5U430 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
Ubr3Q5U430 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
Ubr3Q5U430 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC34.2■■■■□ 3.07
Ubr3Q5U430 Tdp2-203ENSMUST00000223804 1136 ntBASIC34.16■■■■□ 3.06
Ubr3Q5U430 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC34.15■■■■□ 3.06
Ubr3Q5U430 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC34.13■■■■□ 3.05
Ubr3Q5U430 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
Ubr3Q5U430 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
Ubr3Q5U430 Peli2-204ENSMUST00000226513 1320 ntBASIC34.1■■■■□ 3.05
Ubr3Q5U430 Zfp131-207ENSMUST00000224946 1783 ntBASIC34.08■■■■□ 3.05
Ubr3Q5U430 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC34.07■■■■□ 3.05
Ubr3Q5U430 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC34.07■■■■□ 3.05
Ubr3Q5U430 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
Ubr3Q5U430 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC34.06■■■■□ 3.04
Ubr3Q5U430 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC34.05■■■■□ 3.04
Ubr3Q5U430 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
Ubr3Q5U430 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC34.05■■■■□ 3.04
Ubr3Q5U430 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
Ubr3Q5U430 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC34.04■■■■□ 3.04
Ubr3Q5U430 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
Ubr3Q5U430 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC34■■■■□ 3.03
Ubr3Q5U430 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC33.99■■■■□ 3.03
Ubr3Q5U430 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC33.97■■■■□ 3.03
Ubr3Q5U430 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
Ubr3Q5U430 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
Ubr3Q5U430 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
Ubr3Q5U430 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
Retrieved 100 of 76,532 protein–RNA pairs in 9.1 ms