Protein–RNA interactions for Protein: P32958

Rom1, Rod outer segment membrane protein 1, mousemouse

Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rom1P32958 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rom1P32958 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Rom1P32958 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Rom1P32958 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Rom1P32958 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Rom1P32958 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Rom1P32958 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rom1P32958 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rom1P32958 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rom1P32958 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.46■■□□□ 1.03
Rom1P32958 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC21.45■■□□□ 1.02
Rom1P32958 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Rom1P32958 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rom1P32958 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Rom1P32958 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Rom1P32958 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Rom1P32958 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Rom1P32958 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.38■■□□□ 1.01
Rom1P32958 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC21.38■■□□□ 1.01
Rom1P32958 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Rom1P32958 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Rom1P32958 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Rom1P32958 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Rom1P32958 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC21.32■■□□□ 1
Rom1P32958 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC21.32■■□□□ 1
Rom1P32958 Gm2415-204ENSMUST00000190235 2004 ntBASIC21.22■□□□□ 0.99
Rom1P32958 AC153504.1-201ENSMUST00000218379 2290 ntBASIC21.2■□□□□ 0.98
Rom1P32958 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rom1P32958 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rom1P32958 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Rom1P32958 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rom1P32958 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rom1P32958 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
Rom1P32958 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Rom1P32958 Gm27325-201ENSMUST00000175467 74 ntBASIC21.1■□□□□ 0.97
Rom1P32958 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.06■□□□□ 0.96
Rom1P32958 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Rom1P32958 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rom1P32958 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rom1P32958 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Rom1P32958 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rom1P32958 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rom1P32958 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rom1P32958 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rom1P32958 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rom1P32958 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rom1P32958 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rom1P32958 Zfp131-207ENSMUST00000224946 1783 ntBASIC20.92■□□□□ 0.94
Rom1P32958 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Rom1P32958 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rom1P32958 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rom1P32958 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rom1P32958 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Rom1P32958 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Rom1P32958 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rom1P32958 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.87■□□□□ 0.93
Rom1P32958 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rom1P32958 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC20.87■□□□□ 0.93
Rom1P32958 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rom1P32958 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Rom1P32958 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Rom1P32958 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Rom1P32958 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Rom1P32958 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Rom1P32958 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.78■□□□□ 0.92
Rom1P32958 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rom1P32958 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rom1P32958 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rom1P32958 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rom1P32958 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rom1P32958 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC20.72■□□□□ 0.91
Rom1P32958 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rom1P32958 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rom1P32958 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Rom1P32958 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC20.71■□□□□ 0.91
Rom1P32958 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Rom1P32958 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rom1P32958 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rom1P32958 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rom1P32958 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rom1P32958 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.65■□□□□ 0.9
Rom1P32958 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC20.65■□□□□ 0.9
Rom1P32958 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Rom1P32958 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rom1P32958 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Rom1P32958 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Rom1P32958 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Rom1P32958 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Rom1P32958 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC20.58■□□□□ 0.89
Rom1P32958 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Rom1P32958 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Rom1P32958 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Rom1P32958 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.53■□□□□ 0.88
Rom1P32958 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Rom1P32958 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Rom1P32958 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Rom1P32958 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.49■□□□□ 0.87
Rom1P32958 Zxda-201ENSMUST00000117281 2621 ntBASIC20.49■□□□□ 0.87
Rom1P32958 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Rom1P32958 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 126.5 ms