Protein–RNA interactions for Protein: A0A075B6B4

Trav6-4, T cell receptor alpha variable 6-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-4A0A075B6B4 Gm25262-201ENSMUST00000174934 133 ntBASIC21.27■■□□□ 1
Trav6-4A0A075B6B4 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC21.25■□□□□ 0.99
Trav6-4A0A075B6B4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trav6-4A0A075B6B4 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Trav6-4A0A075B6B4 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Trav6-4A0A075B6B4 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trav6-4A0A075B6B4 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trav6-4A0A075B6B4 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.2■□□□□ 0.99
Trav6-4A0A075B6B4 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trav6-4A0A075B6B4 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC21.15■□□□□ 0.98
Trav6-4A0A075B6B4 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trav6-4A0A075B6B4 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC21.11■□□□□ 0.97
Trav6-4A0A075B6B4 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav6-4A0A075B6B4 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav6-4A0A075B6B4 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trav6-4A0A075B6B4 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trav6-4A0A075B6B4 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC21.08■□□□□ 0.97
Trav6-4A0A075B6B4 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav6-4A0A075B6B4 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Trav6-4A0A075B6B4 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav6-4A0A075B6B4 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trav6-4A0A075B6B4 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav6-4A0A075B6B4 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trav6-4A0A075B6B4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav6-4A0A075B6B4 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trav6-4A0A075B6B4 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trav6-4A0A075B6B4 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trav6-4A0A075B6B4 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav6-4A0A075B6B4 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav6-4A0A075B6B4 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.86■□□□□ 0.93
Trav6-4A0A075B6B4 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC20.83■□□□□ 0.92
Trav6-4A0A075B6B4 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trav6-4A0A075B6B4 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trav6-4A0A075B6B4 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.79■□□□□ 0.92
Trav6-4A0A075B6B4 Zfp131-207ENSMUST00000224946 1783 ntBASIC20.79■□□□□ 0.92
Trav6-4A0A075B6B4 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav6-4A0A075B6B4 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trav6-4A0A075B6B4 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.77■□□□□ 0.92
Trav6-4A0A075B6B4 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trav6-4A0A075B6B4 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Trav6-4A0A075B6B4 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trav6-4A0A075B6B4 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trav6-4A0A075B6B4 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trav6-4A0A075B6B4 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trav6-4A0A075B6B4 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trav6-4A0A075B6B4 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC20.69■□□□□ 0.9
Trav6-4A0A075B6B4 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trav6-4A0A075B6B4 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav6-4A0A075B6B4 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Trav6-4A0A075B6B4 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trav6-4A0A075B6B4 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav6-4A0A075B6B4 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trav6-4A0A075B6B4 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trav6-4A0A075B6B4 Gm26115-201ENSMUST00000175605 87 ntBASIC20.6■□□□□ 0.89
Trav6-4A0A075B6B4 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.57■□□□□ 0.88
Trav6-4A0A075B6B4 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Trav6-4A0A075B6B4 Gm17082-201ENSMUST00000166043 1091 ntBASIC20.56■□□□□ 0.88
Trav6-4A0A075B6B4 Gm27322-201ENSMUST00000184007 104 ntBASIC20.55■□□□□ 0.88
Trav6-4A0A075B6B4 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Trav6-4A0A075B6B4 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Trav6-4A0A075B6B4 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6-4A0A075B6B4 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Trav6-4A0A075B6B4 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Trav6-4A0A075B6B4 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trav6-4A0A075B6B4 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC20.51■□□□□ 0.87
Trav6-4A0A075B6B4 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-4A0A075B6B4 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav6-4A0A075B6B4 Gm8109-201ENSMUST00000194076 746 ntBASIC20.49■□□□□ 0.87
Trav6-4A0A075B6B4 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trav6-4A0A075B6B4 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trav6-4A0A075B6B4 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
Trav6-4A0A075B6B4 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav6-4A0A075B6B4 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trav6-4A0A075B6B4 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Trav6-4A0A075B6B4 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Trav6-4A0A075B6B4 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Trav6-4A0A075B6B4 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav6-4A0A075B6B4 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trav6-4A0A075B6B4 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Trav6-4A0A075B6B4 Mipep-204ENSMUST00000225043 1548 ntBASIC20.32■□□□□ 0.84
Trav6-4A0A075B6B4 AC166822.3-201ENSMUST00000227394 661 ntBASIC20.32■□□□□ 0.84
Trav6-4A0A075B6B4 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Trav6-4A0A075B6B4 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC20.31■□□□□ 0.84
Trav6-4A0A075B6B4 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav6-4A0A075B6B4 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav6-4A0A075B6B4 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Trav6-4A0A075B6B4 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trav6-4A0A075B6B4 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav6-4A0A075B6B4 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav6-4A0A075B6B4 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trav6-4A0A075B6B4 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav6-4A0A075B6B4 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.15■□□□□ 0.82
Trav6-4A0A075B6B4 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Trav6-4A0A075B6B4 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav6-4A0A075B6B4 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC20.12■□□□□ 0.81
Trav6-4A0A075B6B4 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav6-4A0A075B6B4 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trav6-4A0A075B6B4 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Trav6-4A0A075B6B4 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Trav6-4A0A075B6B4 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms