Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv1A0A0B4J1G7 Pkd1-207ENSMUST00000228550 1050 ntBASIC16.6■□□□□ 0.25
Trbv1A0A0B4J1G7 Gm6311-201ENSMUST00000073790 878 ntBASIC16.6■□□□□ 0.25
Trbv1A0A0B4J1G7 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv1A0A0B4J1G7 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv1A0A0B4J1G7 Iqck-206ENSMUST00000208658 2891 ntBASIC16.6■□□□□ 0.25
Trbv1A0A0B4J1G7 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trbv1A0A0B4J1G7 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Trbv1A0A0B4J1G7 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trbv1A0A0B4J1G7 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trbv1A0A0B4J1G7 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC16.59■□□□□ 0.25
Trbv1A0A0B4J1G7 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trbv1A0A0B4J1G7 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC16.59■□□□□ 0.25
Trbv1A0A0B4J1G7 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
Trbv1A0A0B4J1G7 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trbv1A0A0B4J1G7 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trbv1A0A0B4J1G7 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC16.58■□□□□ 0.24
Trbv1A0A0B4J1G7 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trbv1A0A0B4J1G7 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trbv1A0A0B4J1G7 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trbv1A0A0B4J1G7 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trbv1A0A0B4J1G7 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trbv1A0A0B4J1G7 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trbv1A0A0B4J1G7 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trbv1A0A0B4J1G7 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trbv1A0A0B4J1G7 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 AC115037.1-201ENSMUST00000223391 2173 ntBASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv1A0A0B4J1G7 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv1A0A0B4J1G7 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
Trbv1A0A0B4J1G7 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trbv1A0A0B4J1G7 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trbv1A0A0B4J1G7 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trbv1A0A0B4J1G7 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trbv1A0A0B4J1G7 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trbv1A0A0B4J1G7 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trbv1A0A0B4J1G7 Gm28731-201ENSMUST00000185564 1569 ntBASIC16.55■□□□□ 0.24
Trbv1A0A0B4J1G7 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Trbv1A0A0B4J1G7 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trbv1A0A0B4J1G7 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trbv1A0A0B4J1G7 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC16.54■□□□□ 0.24
Trbv1A0A0B4J1G7 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Trbv1A0A0B4J1G7 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trbv1A0A0B4J1G7 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trbv1A0A0B4J1G7 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trbv1A0A0B4J1G7 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trbv1A0A0B4J1G7 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trbv1A0A0B4J1G7 Terc-201ENSMUST00000082862 423 ntBASIC16.53■□□□□ 0.24
Trbv1A0A0B4J1G7 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trbv1A0A0B4J1G7 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trbv1A0A0B4J1G7 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trbv1A0A0B4J1G7 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trbv1A0A0B4J1G7 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Trbv1A0A0B4J1G7 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trbv1A0A0B4J1G7 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trbv1A0A0B4J1G7 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trbv1A0A0B4J1G7 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trbv1A0A0B4J1G7 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC16.52■□□□□ 0.24
Trbv1A0A0B4J1G7 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trbv1A0A0B4J1G7 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.23
Trbv1A0A0B4J1G7 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC16.52■□□□□ 0.23
Trbv1A0A0B4J1G7 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trbv1A0A0B4J1G7 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trbv1A0A0B4J1G7 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trbv1A0A0B4J1G7 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv1A0A0B4J1G7 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv1A0A0B4J1G7 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv1A0A0B4J1G7 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv1A0A0B4J1G7 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv1A0A0B4J1G7 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv1A0A0B4J1G7 Gm5987-201ENSMUST00000196433 1151 ntBASIC16.51■□□□□ 0.23
Trbv1A0A0B4J1G7 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv1A0A0B4J1G7 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trbv1A0A0B4J1G7 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv1A0A0B4J1G7 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv1A0A0B4J1G7 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv1A0A0B4J1G7 Gm34220-201ENSMUST00000223001 2709 ntBASIC16.5■□□□□ 0.23
Trbv1A0A0B4J1G7 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv1A0A0B4J1G7 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms