Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf220Q6PDX6 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf220Q6PDX6 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf220Q6PDX6 Gm37136-201ENSMUST00000194368 194 ntBASIC20.19■□□□□ 0.82
Rnf220Q6PDX6 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf220Q6PDX6 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf220Q6PDX6 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.19■□□□□ 0.82
Rnf220Q6PDX6 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf220Q6PDX6 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf220Q6PDX6 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf220Q6PDX6 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf220Q6PDX6 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf220Q6PDX6 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
Rnf220Q6PDX6 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Rnf220Q6PDX6 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Rnf220Q6PDX6 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf220Q6PDX6 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf220Q6PDX6 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf220Q6PDX6 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf220Q6PDX6 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf220Q6PDX6 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.16■□□□□ 0.82
Rnf220Q6PDX6 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Rnf220Q6PDX6 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf220Q6PDX6 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Rnf220Q6PDX6 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf220Q6PDX6 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf220Q6PDX6 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Rnf220Q6PDX6 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf220Q6PDX6 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
Rnf220Q6PDX6 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Rnf220Q6PDX6 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Rnf220Q6PDX6 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rnf220Q6PDX6 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rnf220Q6PDX6 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC20.15■□□□□ 0.82
Rnf220Q6PDX6 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rnf220Q6PDX6 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Rnf220Q6PDX6 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rnf220Q6PDX6 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.15■□□□□ 0.82
Rnf220Q6PDX6 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Rnf220Q6PDX6 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Rnf220Q6PDX6 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Rnf220Q6PDX6 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC20.14■□□□□ 0.81
Rnf220Q6PDX6 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC20.14■□□□□ 0.81
Rnf220Q6PDX6 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf220Q6PDX6 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf220Q6PDX6 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf220Q6PDX6 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf220Q6PDX6 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.13■□□□□ 0.81
Rnf220Q6PDX6 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Rnf220Q6PDX6 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf220Q6PDX6 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Rnf220Q6PDX6 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.13■□□□□ 0.81
Rnf220Q6PDX6 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf220Q6PDX6 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Rnf220Q6PDX6 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC20.12■□□□□ 0.81
Rnf220Q6PDX6 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.12■□□□□ 0.81
Rnf220Q6PDX6 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf220Q6PDX6 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf220Q6PDX6 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf220Q6PDX6 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf220Q6PDX6 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rnf220Q6PDX6 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Rnf220Q6PDX6 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.1■□□□□ 0.81
Rnf220Q6PDX6 Gm9939-201ENSMUST00000067161 1154 ntBASIC20.1■□□□□ 0.81
Rnf220Q6PDX6 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rnf220Q6PDX6 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rnf220Q6PDX6 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rnf220Q6PDX6 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Rnf220Q6PDX6 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Rnf220Q6PDX6 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Rnf220Q6PDX6 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Rnf220Q6PDX6 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.07■□□□□ 0.8
Rnf220Q6PDX6 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rnf220Q6PDX6 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rnf220Q6PDX6 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rnf220Q6PDX6 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rnf220Q6PDX6 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rnf220Q6PDX6 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Rnf220Q6PDX6 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.06■□□□□ 0.8
Rnf220Q6PDX6 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf220Q6PDX6 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf220Q6PDX6 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf220Q6PDX6 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf220Q6PDX6 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf220Q6PDX6 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf220Q6PDX6 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Rnf220Q6PDX6 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf220Q6PDX6 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf220Q6PDX6 Gm6821-201ENSMUST00000107540 542 ntBASIC20.05■□□□□ 0.8
Rnf220Q6PDX6 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf220Q6PDX6 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf220Q6PDX6 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf220Q6PDX6 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rnf220Q6PDX6 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.05■□□□□ 0.8
Rnf220Q6PDX6 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rnf220Q6PDX6 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Rnf220Q6PDX6 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Rnf220Q6PDX6 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Rnf220Q6PDX6 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Rnf220Q6PDX6 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 177.8 ms