Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 AC154454.1-201ENSMUST00000225253 216 ntBASIC16.73■□□□□ 0.27
Trbv1A0A0B4J1G7 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trbv1A0A0B4J1G7 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trbv1A0A0B4J1G7 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Trbv1A0A0B4J1G7 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trbv1A0A0B4J1G7 Gm15043-201ENSMUST00000118843 1543 ntBASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Mir3960-201ENSMUST00000198213 73 ntBASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trbv1A0A0B4J1G7 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trbv1A0A0B4J1G7 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trbv1A0A0B4J1G7 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trbv1A0A0B4J1G7 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trbv1A0A0B4J1G7 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Trbv1A0A0B4J1G7 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Trbv1A0A0B4J1G7 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
Trbv1A0A0B4J1G7 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Trbv1A0A0B4J1G7 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trbv1A0A0B4J1G7 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trbv1A0A0B4J1G7 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trbv1A0A0B4J1G7 AC167019.3-201ENSMUST00000228225 1266 ntBASIC16.7■□□□□ 0.26
Trbv1A0A0B4J1G7 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trbv1A0A0B4J1G7 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Trbv1A0A0B4J1G7 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trbv1A0A0B4J1G7 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Trbv1A0A0B4J1G7 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trbv1A0A0B4J1G7 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC16.68■□□□□ 0.26
Trbv1A0A0B4J1G7 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trbv1A0A0B4J1G7 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trbv1A0A0B4J1G7 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trbv1A0A0B4J1G7 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Trbv1A0A0B4J1G7 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trbv1A0A0B4J1G7 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Trbv1A0A0B4J1G7 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC16.67■□□□□ 0.26
Trbv1A0A0B4J1G7 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC16.67■□□□□ 0.26
Trbv1A0A0B4J1G7 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trbv1A0A0B4J1G7 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC16.67■□□□□ 0.26
Trbv1A0A0B4J1G7 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trbv1A0A0B4J1G7 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Trbv1A0A0B4J1G7 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Trbv1A0A0B4J1G7 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trbv1A0A0B4J1G7 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trbv1A0A0B4J1G7 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC16.66■□□□□ 0.26
Trbv1A0A0B4J1G7 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trbv1A0A0B4J1G7 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Trbv1A0A0B4J1G7 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Trbv1A0A0B4J1G7 Gm9812-201ENSMUST00000061934 968 ntBASIC16.65■□□□□ 0.26
Trbv1A0A0B4J1G7 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trbv1A0A0B4J1G7 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trbv1A0A0B4J1G7 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trbv1A0A0B4J1G7 Gm12818-201ENSMUST00000117562 1349 ntBASIC16.65■□□□□ 0.26
Trbv1A0A0B4J1G7 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC16.65■□□□□ 0.26
Trbv1A0A0B4J1G7 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trbv1A0A0B4J1G7 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trbv1A0A0B4J1G7 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trbv1A0A0B4J1G7 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
Trbv1A0A0B4J1G7 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trbv1A0A0B4J1G7 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trbv1A0A0B4J1G7 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trbv1A0A0B4J1G7 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trbv1A0A0B4J1G7 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC16.63■□□□□ 0.25
Trbv1A0A0B4J1G7 AC153911.1-201ENSMUST00000220378 758 ntBASIC16.63■□□□□ 0.25
Trbv1A0A0B4J1G7 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Trbv1A0A0B4J1G7 Gm4430-201ENSMUST00000192413 1943 ntBASIC16.62■□□□□ 0.25
Trbv1A0A0B4J1G7 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv1A0A0B4J1G7 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv1A0A0B4J1G7 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv1A0A0B4J1G7 AC122317.2-201ENSMUST00000218708 1248 ntBASIC16.62■□□□□ 0.25
Trbv1A0A0B4J1G7 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv1A0A0B4J1G7 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv1A0A0B4J1G7 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
Trbv1A0A0B4J1G7 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trbv1A0A0B4J1G7 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trbv1A0A0B4J1G7 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trbv1A0A0B4J1G7 Gm45364-201ENSMUST00000210883 159 ntBASIC16.61■□□□□ 0.25
Trbv1A0A0B4J1G7 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Trbv1A0A0B4J1G7 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trbv1A0A0B4J1G7 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trbv1A0A0B4J1G7 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv1A0A0B4J1G7 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv1A0A0B4J1G7 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Trbv1A0A0B4J1G7 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv1A0A0B4J1G7 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms