Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Trim56Q80VI1 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Trim56Q80VI1 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Trim56Q80VI1 Gm43566-201ENSMUST00000196851 808 ntBASIC25.74■■□□□ 1.71
Trim56Q80VI1 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Trim56Q80VI1 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Trim56Q80VI1 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Trim56Q80VI1 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC25.73■■□□□ 1.71
Trim56Q80VI1 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC25.73■■□□□ 1.71
Trim56Q80VI1 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Trim56Q80VI1 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Trim56Q80VI1 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Trim56Q80VI1 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
Trim56Q80VI1 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim56Q80VI1 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC25.71■■□□□ 1.71
Trim56Q80VI1 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC25.71■■□□□ 1.71
Trim56Q80VI1 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim56Q80VI1 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trim56Q80VI1 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Trim56Q80VI1 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
Trim56Q80VI1 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
Trim56Q80VI1 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC25.7■■□□□ 1.7
Trim56Q80VI1 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Trim56Q80VI1 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Trim56Q80VI1 AC115037.1-201ENSMUST00000223391 2173 ntBASIC25.69■■□□□ 1.7
Trim56Q80VI1 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Trim56Q80VI1 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Trim56Q80VI1 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
Trim56Q80VI1 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
Trim56Q80VI1 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
Trim56Q80VI1 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Trim56Q80VI1 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Trim56Q80VI1 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Trim56Q80VI1 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Trim56Q80VI1 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Trim56Q80VI1 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Trim56Q80VI1 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Trim56Q80VI1 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Trim56Q80VI1 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Trim56Q80VI1 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Trim56Q80VI1 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Trim56Q80VI1 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
Trim56Q80VI1 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Trim56Q80VI1 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
Trim56Q80VI1 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Trim56Q80VI1 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC25.65■■□□□ 1.7
Trim56Q80VI1 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Trim56Q80VI1 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
Trim56Q80VI1 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Trim56Q80VI1 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
Trim56Q80VI1 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Trim56Q80VI1 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Trim56Q80VI1 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC25.65■■□□□ 1.7
Trim56Q80VI1 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
Trim56Q80VI1 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Trim56Q80VI1 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
Trim56Q80VI1 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Trim56Q80VI1 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Trim56Q80VI1 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Trim56Q80VI1 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Trim56Q80VI1 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC25.64■■□□□ 1.7
Trim56Q80VI1 Gm5812-201ENSMUST00000061073 957 ntBASIC25.64■■□□□ 1.7
Trim56Q80VI1 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Trim56Q80VI1 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
Trim56Q80VI1 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
Trim56Q80VI1 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC25.63■■□□□ 1.69
Trim56Q80VI1 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Trim56Q80VI1 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC25.63■■□□□ 1.69
Trim56Q80VI1 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC25.63■■□□□ 1.69
Trim56Q80VI1 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC25.63■■□□□ 1.69
Trim56Q80VI1 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC25.63■■□□□ 1.69
Trim56Q80VI1 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC25.61■■□□□ 1.69
Trim56Q80VI1 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC25.61■■□□□ 1.69
Trim56Q80VI1 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim56Q80VI1 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim56Q80VI1 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim56Q80VI1 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim56Q80VI1 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Trim56Q80VI1 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Trim56Q80VI1 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
Trim56Q80VI1 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Trim56Q80VI1 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC25.6■■□□□ 1.69
Trim56Q80VI1 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
Trim56Q80VI1 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Trim56Q80VI1 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trim56Q80VI1 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trim56Q80VI1 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC25.59■■□□□ 1.69
Trim56Q80VI1 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trim56Q80VI1 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trim56Q80VI1 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Trim56Q80VI1 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Trim56Q80VI1 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Trim56Q80VI1 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
Trim56Q80VI1 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.68
Trim56Q80VI1 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Trim56Q80VI1 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Trim56Q80VI1 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Trim56Q80VI1 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC25.57■■□□□ 1.68
Trim56Q80VI1 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Trim56Q80VI1 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms