Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC31.49■■■□□ 2.63
Usp47Q8BY87 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Usp47Q8BY87 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC31.48■■■□□ 2.63
Usp47Q8BY87 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC31.48■■■□□ 2.63
Usp47Q8BY87 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
Usp47Q8BY87 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Usp47Q8BY87 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Usp47Q8BY87 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
Usp47Q8BY87 Nsd1-203ENSMUST00000224156 1149 ntBASIC31.46■■■□□ 2.63
Usp47Q8BY87 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Usp47Q8BY87 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Usp47Q8BY87 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Usp47Q8BY87 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
Usp47Q8BY87 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Usp47Q8BY87 Gm45444-201ENSMUST00000211394 898 ntBASIC31.45■■■□□ 2.63
Usp47Q8BY87 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
Usp47Q8BY87 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC31.45■■■□□ 2.63
Usp47Q8BY87 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC31.45■■■□□ 2.62
Usp47Q8BY87 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC31.44■■■□□ 2.62
Usp47Q8BY87 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
Usp47Q8BY87 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Usp47Q8BY87 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC31.44■■■□□ 2.62
Usp47Q8BY87 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Usp47Q8BY87 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
Usp47Q8BY87 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Usp47Q8BY87 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC31.43■■■□□ 2.62
Usp47Q8BY87 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Usp47Q8BY87 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC31.43■■■□□ 2.62
Usp47Q8BY87 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC31.43■■■□□ 2.62
Usp47Q8BY87 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
Usp47Q8BY87 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC31.43■■■□□ 2.62
Usp47Q8BY87 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Usp47Q8BY87 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
Usp47Q8BY87 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
Usp47Q8BY87 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Usp47Q8BY87 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Usp47Q8BY87 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC31.42■■■□□ 2.62
Usp47Q8BY87 Gm43566-201ENSMUST00000196851 808 ntBASIC31.42■■■□□ 2.62
Usp47Q8BY87 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
Usp47Q8BY87 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Usp47Q8BY87 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
Usp47Q8BY87 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Usp47Q8BY87 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
Usp47Q8BY87 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC31.41■■■□□ 2.62
Usp47Q8BY87 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC31.41■■■□□ 2.62
Usp47Q8BY87 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Usp47Q8BY87 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Usp47Q8BY87 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Usp47Q8BY87 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
Usp47Q8BY87 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
Usp47Q8BY87 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC31.39■■■□□ 2.62
Usp47Q8BY87 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Usp47Q8BY87 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC31.38■■■□□ 2.61
Usp47Q8BY87 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC31.38■■■□□ 2.61
Usp47Q8BY87 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Usp47Q8BY87 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
Usp47Q8BY87 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC31.37■■■□□ 2.61
Usp47Q8BY87 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Usp47Q8BY87 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC31.36■■■□□ 2.61
Usp47Q8BY87 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Usp47Q8BY87 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Usp47Q8BY87 Gm5812-201ENSMUST00000061073 957 ntBASIC31.35■■■□□ 2.61
Usp47Q8BY87 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
Usp47Q8BY87 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Usp47Q8BY87 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
Usp47Q8BY87 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Usp47Q8BY87 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
Usp47Q8BY87 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
Usp47Q8BY87 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Usp47Q8BY87 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
Usp47Q8BY87 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Usp47Q8BY87 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Usp47Q8BY87 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Usp47Q8BY87 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Usp47Q8BY87 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Usp47Q8BY87 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC31.32■■■□□ 2.6
Usp47Q8BY87 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
Usp47Q8BY87 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
Usp47Q8BY87 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Usp47Q8BY87 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Usp47Q8BY87 Il17rd-202ENSMUST00000223942 2186 ntBASIC31.3■■■□□ 2.6
Usp47Q8BY87 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
Usp47Q8BY87 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Usp47Q8BY87 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC31.3■■■□□ 2.6
Usp47Q8BY87 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
Usp47Q8BY87 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Usp47Q8BY87 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Usp47Q8BY87 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC31.28■■■□□ 2.6
Usp47Q8BY87 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Usp47Q8BY87 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC31.27■■■□□ 2.6
Usp47Q8BY87 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
Usp47Q8BY87 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC31.27■■■□□ 2.6
Usp47Q8BY87 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Usp47Q8BY87 Nsd1-206ENSMUST00000224918 1001 ntBASIC31.27■■■□□ 2.6
Usp47Q8BY87 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC31.27■■■□□ 2.6
Usp47Q8BY87 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Usp47Q8BY87 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.6
Usp47Q8BY87 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Usp47Q8BY87 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC31.26■■■□□ 2.59
Usp47Q8BY87 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms