Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim63Q38HM4 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim63Q38HM4 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim63Q38HM4 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim63Q38HM4 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Trim63Q38HM4 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim63Q38HM4 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Trim63Q38HM4 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim63Q38HM4 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim63Q38HM4 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Trim63Q38HM4 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim63Q38HM4 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim63Q38HM4 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim63Q38HM4 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim63Q38HM4 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Trim63Q38HM4 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim63Q38HM4 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Trim63Q38HM4 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim63Q38HM4 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim63Q38HM4 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim63Q38HM4 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC18.19■□□□□ 0.5
Trim63Q38HM4 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim63Q38HM4 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim63Q38HM4 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC18.18■□□□□ 0.5
Trim63Q38HM4 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim63Q38HM4 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
Trim63Q38HM4 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim63Q38HM4 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.18■□□□□ 0.5
Trim63Q38HM4 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim63Q38HM4 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim63Q38HM4 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim63Q38HM4 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Trim63Q38HM4 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim63Q38HM4 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim63Q38HM4 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Trim63Q38HM4 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim63Q38HM4 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim63Q38HM4 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim63Q38HM4 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim63Q38HM4 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim63Q38HM4 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trim63Q38HM4 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim63Q38HM4 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim63Q38HM4 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trim63Q38HM4 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim63Q38HM4 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trim63Q38HM4 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Trim63Q38HM4 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim63Q38HM4 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim63Q38HM4 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim63Q38HM4 Iqck-206ENSMUST00000208658 2891 ntBASIC18.15■□□□□ 0.5
Trim63Q38HM4 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim63Q38HM4 Gm32051-202ENSMUST00000197905 2385 ntBASIC18.15■□□□□ 0.5
Trim63Q38HM4 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Trim63Q38HM4 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim63Q38HM4 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Trim63Q38HM4 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim63Q38HM4 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim63Q38HM4 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim63Q38HM4 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim63Q38HM4 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim63Q38HM4 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim63Q38HM4 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Trim63Q38HM4 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim63Q38HM4 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Trim63Q38HM4 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Trim63Q38HM4 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim63Q38HM4 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Trim63Q38HM4 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim63Q38HM4 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Trim63Q38HM4 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim63Q38HM4 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Trim63Q38HM4 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim63Q38HM4 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim63Q38HM4 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Trim63Q38HM4 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Trim63Q38HM4 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Trim63Q38HM4 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC18.11■□□□□ 0.49
Trim63Q38HM4 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim63Q38HM4 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim63Q38HM4 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim63Q38HM4 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim63Q38HM4 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim63Q38HM4 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim63Q38HM4 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim63Q38HM4 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trim63Q38HM4 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim63Q38HM4 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim63Q38HM4 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim63Q38HM4 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim63Q38HM4 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim63Q38HM4 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim63Q38HM4 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim63Q38HM4 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim63Q38HM4 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim63Q38HM4 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim63Q38HM4 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim63Q38HM4 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim63Q38HM4 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.07■□□□□ 0.48
Trim63Q38HM4 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 68.2 ms