Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Cstf1Q99LC2 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Cstf1Q99LC2 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Cstf1Q99LC2 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Cstf1Q99LC2 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Cstf1Q99LC2 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC22.18■■□□□ 1.14
Cstf1Q99LC2 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Cstf1Q99LC2 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC22.18■■□□□ 1.14
Cstf1Q99LC2 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Cstf1Q99LC2 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
Cstf1Q99LC2 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC22.17■■□□□ 1.14
Cstf1Q99LC2 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Cstf1Q99LC2 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Cstf1Q99LC2 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Cstf1Q99LC2 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Cstf1Q99LC2 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Gm5131-201ENSMUST00000212776 1238 ntBASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC22.15■■□□□ 1.14
Cstf1Q99LC2 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
Cstf1Q99LC2 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
Cstf1Q99LC2 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.14
Cstf1Q99LC2 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Cstf1Q99LC2 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Cstf1Q99LC2 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
Cstf1Q99LC2 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC22.14■■□□□ 1.13
Cstf1Q99LC2 Gm13241-201ENSMUST00000094493 780 ntBASIC22.14■■□□□ 1.13
Cstf1Q99LC2 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Cstf1Q99LC2 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Cstf1Q99LC2 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC22.13■■□□□ 1.13
Cstf1Q99LC2 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Cstf1Q99LC2 Gm43034-201ENSMUST00000198678 1364 ntBASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Gm7417-201ENSMUST00000192950 473 ntBASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Cstf1Q99LC2 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cstf1Q99LC2 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cstf1Q99LC2 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC22.1■■□□□ 1.13
Cstf1Q99LC2 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cstf1Q99LC2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
Cstf1Q99LC2 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cstf1Q99LC2 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cstf1Q99LC2 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Cstf1Q99LC2 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Cstf1Q99LC2 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Cstf1Q99LC2 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cstf1Q99LC2 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cstf1Q99LC2 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cstf1Q99LC2 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Cstf1Q99LC2 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC22.07■■□□□ 1.12
Cstf1Q99LC2 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Cstf1Q99LC2 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Cstf1Q99LC2 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Cstf1Q99LC2 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Cstf1Q99LC2 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Cstf1Q99LC2 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Cstf1Q99LC2 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
Cstf1Q99LC2 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Cstf1Q99LC2 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cstf1Q99LC2 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cstf1Q99LC2 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cstf1Q99LC2 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Cstf1Q99LC2 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Cstf1Q99LC2 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Cstf1Q99LC2 Gm9847-201ENSMUST00000052528 599 ntBASIC22.03■■□□□ 1.12
Cstf1Q99LC2 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
Cstf1Q99LC2 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
Cstf1Q99LC2 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Cstf1Q99LC2 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Cstf1Q99LC2 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC22.02■■□□□ 1.12
Cstf1Q99LC2 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cstf1Q99LC2 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC22■■□□□ 1.11
Cstf1Q99LC2 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
Cstf1Q99LC2 AC153890.1-201ENSMUST00000220021 2469 ntBASIC22■■□□□ 1.11
Cstf1Q99LC2 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC22■■□□□ 1.11
Cstf1Q99LC2 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Cstf1Q99LC2 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms