Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Cchcr1Q8K2I2 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Cchcr1Q8K2I2 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Cchcr1Q8K2I2 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
Cchcr1Q8K2I2 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Cchcr1Q8K2I2 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
Cchcr1Q8K2I2 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Cchcr1Q8K2I2 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Cchcr1Q8K2I2 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Cchcr1Q8K2I2 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Cchcr1Q8K2I2 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC26.1■■□□□ 1.77
Cchcr1Q8K2I2 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Cchcr1Q8K2I2 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC26.1■■□□□ 1.77
Cchcr1Q8K2I2 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC26.1■■□□□ 1.77
Cchcr1Q8K2I2 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Cchcr1Q8K2I2 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cchcr1Q8K2I2 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC26.09■■□□□ 1.77
Cchcr1Q8K2I2 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cchcr1Q8K2I2 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cchcr1Q8K2I2 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cchcr1Q8K2I2 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cchcr1Q8K2I2 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cchcr1Q8K2I2 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Cchcr1Q8K2I2 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Cchcr1Q8K2I2 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Cchcr1Q8K2I2 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
Cchcr1Q8K2I2 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
Cchcr1Q8K2I2 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Cchcr1Q8K2I2 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Cchcr1Q8K2I2 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
Cchcr1Q8K2I2 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
Cchcr1Q8K2I2 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Cchcr1Q8K2I2 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Cchcr1Q8K2I2 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Cchcr1Q8K2I2 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
Cchcr1Q8K2I2 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
Cchcr1Q8K2I2 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC26.06■■□□□ 1.76
Cchcr1Q8K2I2 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Cchcr1Q8K2I2 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Cchcr1Q8K2I2 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
Cchcr1Q8K2I2 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
Cchcr1Q8K2I2 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Cchcr1Q8K2I2 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Cchcr1Q8K2I2 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Cchcr1Q8K2I2 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC26.04■■□□□ 1.76
Cchcr1Q8K2I2 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC26.04■■□□□ 1.76
Cchcr1Q8K2I2 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Cchcr1Q8K2I2 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Cchcr1Q8K2I2 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cchcr1Q8K2I2 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
Cchcr1Q8K2I2 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
Cchcr1Q8K2I2 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Cchcr1Q8K2I2 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cchcr1Q8K2I2 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC26.02■■□□□ 1.76
Cchcr1Q8K2I2 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
Cchcr1Q8K2I2 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cchcr1Q8K2I2 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cchcr1Q8K2I2 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
Cchcr1Q8K2I2 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cchcr1Q8K2I2 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
Cchcr1Q8K2I2 Gm9910-201ENSMUST00000195385 1550 ntBASIC26.01■■□□□ 1.75
Cchcr1Q8K2I2 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cchcr1Q8K2I2 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cchcr1Q8K2I2 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cchcr1Q8K2I2 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
Cchcr1Q8K2I2 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC26■■□□□ 1.75
Cchcr1Q8K2I2 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
Cchcr1Q8K2I2 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Cchcr1Q8K2I2 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Cchcr1Q8K2I2 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC26■■□□□ 1.75
Cchcr1Q8K2I2 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Cchcr1Q8K2I2 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
Cchcr1Q8K2I2 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
Cchcr1Q8K2I2 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Cchcr1Q8K2I2 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC25.99■■□□□ 1.75
Cchcr1Q8K2I2 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC25.99■■□□□ 1.75
Cchcr1Q8K2I2 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Cchcr1Q8K2I2 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Cchcr1Q8K2I2 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC25.98■■□□□ 1.75
Cchcr1Q8K2I2 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
Cchcr1Q8K2I2 Gm22567-201ENSMUST00000175542 342 ntBASIC25.98■■□□□ 1.75
Cchcr1Q8K2I2 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Cchcr1Q8K2I2 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC25.98■■□□□ 1.75
Cchcr1Q8K2I2 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Cchcr1Q8K2I2 Gm6311-201ENSMUST00000073790 878 ntBASIC25.97■■□□□ 1.75
Cchcr1Q8K2I2 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Cchcr1Q8K2I2 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
Cchcr1Q8K2I2 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
Cchcr1Q8K2I2 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Cchcr1Q8K2I2 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
Cchcr1Q8K2I2 AC153524.1-201ENSMUST00000220436 1935 ntBASIC25.95■■□□□ 1.74
Cchcr1Q8K2I2 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC25.95■■□□□ 1.74
Cchcr1Q8K2I2 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC25.95■■□□□ 1.74
Cchcr1Q8K2I2 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Cchcr1Q8K2I2 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.74
Cchcr1Q8K2I2 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Cchcr1Q8K2I2 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
Cchcr1Q8K2I2 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC25.94■■□□□ 1.74
Cchcr1Q8K2I2 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Cchcr1Q8K2I2 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms