Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col5a1O88207 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col5a1O88207 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col5a1O88207 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col5a1O88207 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col5a1O88207 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
Col5a1O88207 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Col5a1O88207 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Col5a1O88207 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC20.46■□□□□ 0.87
Col5a1O88207 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col5a1O88207 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col5a1O88207 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Col5a1O88207 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col5a1O88207 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Col5a1O88207 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Col5a1O88207 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col5a1O88207 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Col5a1O88207 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col5a1O88207 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col5a1O88207 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col5a1O88207 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Col5a1O88207 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col5a1O88207 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col5a1O88207 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Col5a1O88207 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Col5a1O88207 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col5a1O88207 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col5a1O88207 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Col5a1O88207 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Col5a1O88207 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col5a1O88207 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col5a1O88207 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col5a1O88207 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col5a1O88207 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Col5a1O88207 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Col5a1O88207 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Col5a1O88207 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Col5a1O88207 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.39■□□□□ 0.86
Col5a1O88207 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col5a1O88207 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col5a1O88207 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Col5a1O88207 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.39■□□□□ 0.85
Col5a1O88207 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Col5a1O88207 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col5a1O88207 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Col5a1O88207 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col5a1O88207 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Col5a1O88207 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.37■□□□□ 0.85
Col5a1O88207 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC20.37■□□□□ 0.85
Col5a1O88207 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.37■□□□□ 0.85
Col5a1O88207 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Col5a1O88207 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col5a1O88207 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col5a1O88207 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col5a1O88207 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Col5a1O88207 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
Col5a1O88207 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Col5a1O88207 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col5a1O88207 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Col5a1O88207 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col5a1O88207 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.35■□□□□ 0.85
Col5a1O88207 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col5a1O88207 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Col5a1O88207 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Col5a1O88207 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.34■□□□□ 0.85
Col5a1O88207 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.34■□□□□ 0.85
Col5a1O88207 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col5a1O88207 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Col5a1O88207 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col5a1O88207 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col5a1O88207 Gm21956-201ENSMUST00000179946 522 ntBASIC20.34■□□□□ 0.85
Col5a1O88207 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.34■□□□□ 0.85
Col5a1O88207 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Col5a1O88207 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col5a1O88207 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.33■□□□□ 0.85
Col5a1O88207 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col5a1O88207 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col5a1O88207 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col5a1O88207 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.33■□□□□ 0.84
Col5a1O88207 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col5a1O88207 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col5a1O88207 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
Col5a1O88207 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col5a1O88207 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col5a1O88207 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col5a1O88207 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.32■□□□□ 0.84
Col5a1O88207 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.32■□□□□ 0.84
Col5a1O88207 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC20.32■□□□□ 0.84
Col5a1O88207 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col5a1O88207 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col5a1O88207 Etf1-202ENSMUST00000180351 108 ntBASIC20.31■□□□□ 0.84
Col5a1O88207 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.31■□□□□ 0.84
Col5a1O88207 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Col5a1O88207 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Col5a1O88207 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Col5a1O88207 Gm10232-201ENSMUST00000089221 720 ntBASIC20.3■□□□□ 0.84
Col5a1O88207 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col5a1O88207 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col5a1O88207 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Col5a1O88207 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 99.6 ms