Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Trim56Q80VI1 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC26.61■■□□□ 1.85
Trim56Q80VI1 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC26.61■■□□□ 1.85
Trim56Q80VI1 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC26.6■■□□□ 1.85
Trim56Q80VI1 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC26.6■■□□□ 1.85
Trim56Q80VI1 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trim56Q80VI1 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Trim56Q80VI1 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
Trim56Q80VI1 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Trim56Q80VI1 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Trim56Q80VI1 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC26.59■■□□□ 1.85
Trim56Q80VI1 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Trim56Q80VI1 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC26.58■■□□□ 1.85
Trim56Q80VI1 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Trim56Q80VI1 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Trim56Q80VI1 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Trim56Q80VI1 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Trim56Q80VI1 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim56Q80VI1 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Trim56Q80VI1 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC26.57■■□□□ 1.84
Trim56Q80VI1 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim56Q80VI1 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
Trim56Q80VI1 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Trim56Q80VI1 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Trim56Q80VI1 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
Trim56Q80VI1 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Trim56Q80VI1 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Trim56Q80VI1 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
Trim56Q80VI1 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Trim56Q80VI1 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
Trim56Q80VI1 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
Trim56Q80VI1 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Trim56Q80VI1 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Trim56Q80VI1 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
Trim56Q80VI1 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC26.53■■□□□ 1.84
Trim56Q80VI1 Gm7199-201ENSMUST00000118327 1485 ntBASIC26.53■■□□□ 1.84
Trim56Q80VI1 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Trim56Q80VI1 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
Trim56Q80VI1 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Trim56Q80VI1 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim56Q80VI1 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Trim56Q80VI1 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC26.51■■□□□ 1.83
Trim56Q80VI1 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim56Q80VI1 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim56Q80VI1 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim56Q80VI1 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Trim56Q80VI1 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC26.5■■□□□ 1.83
Trim56Q80VI1 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
Trim56Q80VI1 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.5■■□□□ 1.83
Trim56Q80VI1 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Trim56Q80VI1 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Trim56Q80VI1 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Trim56Q80VI1 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
Trim56Q80VI1 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC26.49■■□□□ 1.83
Trim56Q80VI1 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Trim56Q80VI1 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Trim56Q80VI1 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
Trim56Q80VI1 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC26.49■■□□□ 1.83
Trim56Q80VI1 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Trim56Q80VI1 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Trim56Q80VI1 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Trim56Q80VI1 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Trim56Q80VI1 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Trim56Q80VI1 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Trim56Q80VI1 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Trim56Q80VI1 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
Trim56Q80VI1 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC26.45■■□□□ 1.83
Trim56Q80VI1 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC26.45■■□□□ 1.82
Trim56Q80VI1 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Trim56Q80VI1 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Trim56Q80VI1 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
Trim56Q80VI1 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Trim56Q80VI1 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Trim56Q80VI1 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
Trim56Q80VI1 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Trim56Q80VI1 AC117769.4-201ENSMUST00000225679 685 ntBASIC26.43■■□□□ 1.82
Trim56Q80VI1 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
Trim56Q80VI1 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Trim56Q80VI1 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Trim56Q80VI1 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Trim56Q80VI1 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
Trim56Q80VI1 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC26.4■■□□□ 1.82
Trim56Q80VI1 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Trim56Q80VI1 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Trim56Q80VI1 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Trim56Q80VI1 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Trim56Q80VI1 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Trim56Q80VI1 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Trim56Q80VI1 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC26.39■■□□□ 1.82
Trim56Q80VI1 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Trim56Q80VI1 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.81
Trim56Q80VI1 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.81
Trim56Q80VI1 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
Trim56Q80VI1 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Trim56Q80VI1 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Trim56Q80VI1 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trim56Q80VI1 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trim56Q80VI1 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trim56Q80VI1 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC26.37■■□□□ 1.81
Trim56Q80VI1 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC26.37■■□□□ 1.81
Retrieved 100 of 76,532 protein–RNA pairs in 70.6 ms