Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6d-4Q5R1I0 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6d-4Q5R1I0 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trav6d-4Q5R1I0 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav6d-4Q5R1I0 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC18.78■□□□□ 0.6
Trav6d-4Q5R1I0 Gm5067-201ENSMUST00000170449 1009 ntBASIC18.78■□□□□ 0.6
Trav6d-4Q5R1I0 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trav6d-4Q5R1I0 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav6d-4Q5R1I0 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav6d-4Q5R1I0 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav6d-4Q5R1I0 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trav6d-4Q5R1I0 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC18.77■□□□□ 0.6
Trav6d-4Q5R1I0 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-4Q5R1I0 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-4Q5R1I0 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-4Q5R1I0 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-4Q5R1I0 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC18.76■□□□□ 0.59
Trav6d-4Q5R1I0 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-4Q5R1I0 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-4Q5R1I0 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-4Q5R1I0 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Trav6d-4Q5R1I0 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Trav6d-4Q5R1I0 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Trav6d-4Q5R1I0 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC18.75■□□□□ 0.59
Trav6d-4Q5R1I0 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Trav6d-4Q5R1I0 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Trav6d-4Q5R1I0 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC18.75■□□□□ 0.59
Trav6d-4Q5R1I0 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6d-4Q5R1I0 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Trav6d-4Q5R1I0 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6d-4Q5R1I0 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6d-4Q5R1I0 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6d-4Q5R1I0 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC18.74■□□□□ 0.59
Trav6d-4Q5R1I0 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6d-4Q5R1I0 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Trav6d-4Q5R1I0 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6d-4Q5R1I0 Gm7199-201ENSMUST00000118327 1485 ntBASIC18.73■□□□□ 0.59
Trav6d-4Q5R1I0 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6d-4Q5R1I0 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6d-4Q5R1I0 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6d-4Q5R1I0 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trav6d-4Q5R1I0 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6d-4Q5R1I0 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Trav6d-4Q5R1I0 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC18.72■□□□□ 0.59
Trav6d-4Q5R1I0 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Trav6d-4Q5R1I0 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6d-4Q5R1I0 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6d-4Q5R1I0 Gm42699-201ENSMUST00000198104 1657 ntBASIC18.72■□□□□ 0.59
Trav6d-4Q5R1I0 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trav6d-4Q5R1I0 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6d-4Q5R1I0 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6d-4Q5R1I0 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6d-4Q5R1I0 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trav6d-4Q5R1I0 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav6d-4Q5R1I0 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trav6d-4Q5R1I0 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trav6d-4Q5R1I0 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-4Q5R1I0 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Trav6d-4Q5R1I0 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-4Q5R1I0 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-4Q5R1I0 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-4Q5R1I0 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-4Q5R1I0 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-4Q5R1I0 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Trav6d-4Q5R1I0 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6d-4Q5R1I0 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Trav6d-4Q5R1I0 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Trav6d-4Q5R1I0 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Trav6d-4Q5R1I0 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav6d-4Q5R1I0 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav6d-4Q5R1I0 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav6d-4Q5R1I0 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Trav6d-4Q5R1I0 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav6d-4Q5R1I0 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav6d-4Q5R1I0 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC18.66■□□□□ 0.58
Trav6d-4Q5R1I0 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC18.66■□□□□ 0.58
Trav6d-4Q5R1I0 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
Trav6d-4Q5R1I0 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trav6d-4Q5R1I0 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6d-4Q5R1I0 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6d-4Q5R1I0 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trav6d-4Q5R1I0 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC18.65■□□□□ 0.58
Trav6d-4Q5R1I0 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6d-4Q5R1I0 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6d-4Q5R1I0 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6d-4Q5R1I0 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6d-4Q5R1I0 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav6d-4Q5R1I0 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trav6d-4Q5R1I0 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trav6d-4Q5R1I0 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC18.64■□□□□ 0.57
Trav6d-4Q5R1I0 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6d-4Q5R1I0 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trav6d-4Q5R1I0 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6d-4Q5R1I0 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Trav6d-4Q5R1I0 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Trav6d-4Q5R1I0 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6d-4Q5R1I0 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6d-4Q5R1I0 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav6d-4Q5R1I0 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav6d-4Q5R1I0 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms