Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Col28a1Q2UY11 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
Col28a1Q2UY11 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col28a1Q2UY11 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
Col28a1Q2UY11 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col28a1Q2UY11 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.57■■□□□ 1.04
Col28a1Q2UY11 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.57■■□□□ 1.04
Col28a1Q2UY11 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Col28a1Q2UY11 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Col28a1Q2UY11 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.56■■□□□ 1.04
Col28a1Q2UY11 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Col28a1Q2UY11 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Col28a1Q2UY11 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col28a1Q2UY11 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col28a1Q2UY11 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col28a1Q2UY11 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Col28a1Q2UY11 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Col28a1Q2UY11 Gm6934-201ENSMUST00000194780 1905 ntBASIC21.54■■□□□ 1.04
Col28a1Q2UY11 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Col28a1Q2UY11 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Col28a1Q2UY11 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Col28a1Q2UY11 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col28a1Q2UY11 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Col28a1Q2UY11 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col28a1Q2UY11 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Col28a1Q2UY11 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Col28a1Q2UY11 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col28a1Q2UY11 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Col28a1Q2UY11 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
Col28a1Q2UY11 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
Col28a1Q2UY11 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC21.51■■□□□ 1.03
Col28a1Q2UY11 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.51■■□□□ 1.03
Col28a1Q2UY11 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Col28a1Q2UY11 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col28a1Q2UY11 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col28a1Q2UY11 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col28a1Q2UY11 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
Col28a1Q2UY11 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21.5■■□□□ 1.03
Col28a1Q2UY11 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col28a1Q2UY11 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Col28a1Q2UY11 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col28a1Q2UY11 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col28a1Q2UY11 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Col28a1Q2UY11 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.48■■□□□ 1.03
Col28a1Q2UY11 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col28a1Q2UY11 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.47■■□□□ 1.03
Col28a1Q2UY11 Dmtn-209ENSMUST00000228295 2572 ntBASIC21.47■■□□□ 1.03
Col28a1Q2UY11 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col28a1Q2UY11 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col28a1Q2UY11 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col28a1Q2UY11 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col28a1Q2UY11 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col28a1Q2UY11 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
Col28a1Q2UY11 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col28a1Q2UY11 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col28a1Q2UY11 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col28a1Q2UY11 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Col28a1Q2UY11 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col28a1Q2UY11 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC21.45■■□□□ 1.02
Col28a1Q2UY11 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col28a1Q2UY11 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col28a1Q2UY11 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.45■■□□□ 1.02
Col28a1Q2UY11 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col28a1Q2UY11 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col28a1Q2UY11 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col28a1Q2UY11 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Col28a1Q2UY11 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col28a1Q2UY11 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.43■■□□□ 1.02
Col28a1Q2UY11 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col28a1Q2UY11 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Col28a1Q2UY11 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.42■■□□□ 1.02
Col28a1Q2UY11 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col28a1Q2UY11 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col28a1Q2UY11 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.41■■□□□ 1.02
Col28a1Q2UY11 Gm11175-201ENSMUST00000116172 543 ntBASIC21.41■■□□□ 1.02
Col28a1Q2UY11 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Col28a1Q2UY11 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC21.41■■□□□ 1.02
Col28a1Q2UY11 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
Col28a1Q2UY11 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC21.41■■□□□ 1.02
Col28a1Q2UY11 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC21.41■■□□□ 1.02
Col28a1Q2UY11 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col28a1Q2UY11 Gm26766-202ENSMUST00000227544 2347 ntBASIC21.4■■□□□ 1.02
Col28a1Q2UY11 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col28a1Q2UY11 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col28a1Q2UY11 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Col28a1Q2UY11 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.4■■□□□ 1.02
Col28a1Q2UY11 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col28a1Q2UY11 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col28a1Q2UY11 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC21.39■■□□□ 1.02
Col28a1Q2UY11 Mir6538-201ENSMUST00000183713 110 ntBASIC21.39■■□□□ 1.01
Col28a1Q2UY11 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Col28a1Q2UY11 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col28a1Q2UY11 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col28a1Q2UY11 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col28a1Q2UY11 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC21.38■■□□□ 1.01
Col28a1Q2UY11 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Col28a1Q2UY11 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col28a1Q2UY11 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col28a1Q2UY11 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Col28a1Q2UY11 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21.37■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 239.2 ms