Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Nkx3-2P97503 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Nkx3-2P97503 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx3-2P97503 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx3-2P97503 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx3-2P97503 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Nkx3-2P97503 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Nkx3-2P97503 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Nkx3-2P97503 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Nkx3-2P97503 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.95■□□□□ 0.94
Nkx3-2P97503 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Nkx3-2P97503 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Nkx3-2P97503 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
Nkx3-2P97503 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nkx3-2P97503 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nkx3-2P97503 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nkx3-2P97503 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nkx3-2P97503 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
Nkx3-2P97503 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Nkx3-2P97503 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nkx3-2P97503 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nkx3-2P97503 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nkx3-2P97503 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Nkx3-2P97503 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nkx3-2P97503 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nkx3-2P97503 AC122428.3-201ENSMUST00000215551 2290 ntBASIC20.92■□□□□ 0.94
Nkx3-2P97503 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Nkx3-2P97503 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.91■□□□□ 0.94
Nkx3-2P97503 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nkx3-2P97503 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nkx3-2P97503 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nkx3-2P97503 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Nkx3-2P97503 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.9■□□□□ 0.94
Nkx3-2P97503 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.9■□□□□ 0.94
Nkx3-2P97503 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Nkx3-2P97503 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.9■□□□□ 0.94
Nkx3-2P97503 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.89■□□□□ 0.93
Nkx3-2P97503 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nkx3-2P97503 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Nkx3-2P97503 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nkx3-2P97503 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Nkx3-2P97503 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.89■□□□□ 0.93
Nkx3-2P97503 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Nkx3-2P97503 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nkx3-2P97503 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Nkx3-2P97503 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
Nkx3-2P97503 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx3-2P97503 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx3-2P97503 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx3-2P97503 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.87■□□□□ 0.93
Nkx3-2P97503 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.87■□□□□ 0.93
Nkx3-2P97503 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx3-2P97503 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nkx3-2P97503 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Nkx3-2P97503 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.87■□□□□ 0.93
Nkx3-2P97503 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-2P97503 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-2P97503 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-2P97503 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-2P97503 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-2P97503 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-2P97503 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-2P97503 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Nkx3-2P97503 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nkx3-2P97503 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx3-2P97503 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx3-2P97503 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx3-2P97503 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nkx3-2P97503 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Nkx3-2P97503 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nkx3-2P97503 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nkx3-2P97503 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Nkx3-2P97503 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.84■□□□□ 0.93
Nkx3-2P97503 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nkx3-2P97503 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Nkx3-2P97503 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.83■□□□□ 0.93
Nkx3-2P97503 Gm5921-201ENSMUST00000075898 882 ntBASIC20.83■□□□□ 0.93
Nkx3-2P97503 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Nkx3-2P97503 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx3-2P97503 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Nkx3-2P97503 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.81■□□□□ 0.92
Nkx3-2P97503 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx3-2P97503 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx3-2P97503 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx3-2P97503 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx3-2P97503 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Nkx3-2P97503 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx3-2P97503 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Nkx3-2P97503 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx3-2P97503 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx3-2P97503 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Nkx3-2P97503 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Nkx3-2P97503 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx3-2P97503 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx3-2P97503 Il17rd-202ENSMUST00000223942 2186 ntBASIC20.79■□□□□ 0.92
Nkx3-2P97503 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx3-2P97503 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Nkx3-2P97503 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Nkx3-2P97503 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.78■□□□□ 0.92
Nkx3-2P97503 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms