Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msx1P13297 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msx1P13297 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC21.08■□□□□ 0.97
Msx1P13297 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Msx1P13297 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Msx1P13297 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msx1P13297 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Msx1P13297 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msx1P13297 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Msx1P13297 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msx1P13297 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Msx1P13297 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Msx1P13297 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Msx1P13297 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Msx1P13297 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Msx1P13297 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Msx1P13297 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Msx1P13297 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Msx1P13297 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.05■□□□□ 0.96
Msx1P13297 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC21.05■□□□□ 0.96
Msx1P13297 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.05■□□□□ 0.96
Msx1P13297 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msx1P13297 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Msx1P13297 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.04■□□□□ 0.96
Msx1P13297 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.04■□□□□ 0.96
Msx1P13297 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msx1P13297 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Msx1P13297 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Msx1P13297 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Msx1P13297 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC21.03■□□□□ 0.96
Msx1P13297 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Msx1P13297 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Msx1P13297 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
Msx1P13297 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Msx1P13297 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Msx1P13297 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Msx1P13297 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Msx1P13297 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Msx1P13297 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Msx1P13297 Terc-201ENSMUST00000082862 423 ntBASIC21■□□□□ 0.95
Msx1P13297 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Msx1P13297 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
Msx1P13297 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21■□□□□ 0.95
Msx1P13297 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Msx1P13297 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msx1P13297 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msx1P13297 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Msx1P13297 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msx1P13297 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msx1P13297 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Msx1P13297 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Msx1P13297 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Msx1P13297 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Msx1P13297 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Msx1P13297 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC20.97■□□□□ 0.95
Msx1P13297 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Msx1P13297 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Msx1P13297 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msx1P13297 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Msx1P13297 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Msx1P13297 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.96■□□□□ 0.95
Msx1P13297 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC20.95■□□□□ 0.94
Msx1P13297 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Msx1P13297 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Msx1P13297 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Msx1P13297 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Msx1P13297 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Msx1P13297 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Msx1P13297 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Msx1P13297 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msx1P13297 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Msx1P13297 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC20.93■□□□□ 0.94
Msx1P13297 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Msx1P13297 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Msx1P13297 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.92■□□□□ 0.94
Msx1P13297 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msx1P13297 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Msx1P13297 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msx1P13297 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msx1P13297 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Msx1P13297 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msx1P13297 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.91■□□□□ 0.94
Msx1P13297 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msx1P13297 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msx1P13297 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msx1P13297 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Msx1P13297 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Msx1P13297 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC20.9■□□□□ 0.94
Msx1P13297 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC20.9■□□□□ 0.94
Msx1P13297 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.9■□□□□ 0.94
Msx1P13297 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msx1P13297 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msx1P13297 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Msx1P13297 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msx1P13297 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Msx1P13297 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Msx1P13297 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC20.89■□□□□ 0.93
Msx1P13297 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Msx1P13297 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Msx1P13297 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms