Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Col1a1P11087 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Col1a1P11087 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
Col1a1P11087 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
Col1a1P11087 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
Col1a1P11087 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Col1a1P11087 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Col1a1P11087 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Col1a1P11087 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Col1a1P11087 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
Col1a1P11087 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Col1a1P11087 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC26.84■■□□□ 1.89
Col1a1P11087 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Col1a1P11087 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Col1a1P11087 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Col1a1P11087 Gm10232-201ENSMUST00000089221 720 ntBASIC26.84■■□□□ 1.89
Col1a1P11087 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC26.83■■□□□ 1.89
Col1a1P11087 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
Col1a1P11087 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
Col1a1P11087 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Col1a1P11087 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Col1a1P11087 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Col1a1P11087 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Col1a1P11087 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Col1a1P11087 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Col1a1P11087 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Col1a1P11087 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Col1a1P11087 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Col1a1P11087 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Col1a1P11087 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC26.81■■□□□ 1.88
Col1a1P11087 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Col1a1P11087 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
Col1a1P11087 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC26.79■■□□□ 1.88
Col1a1P11087 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC26.79■■□□□ 1.88
Col1a1P11087 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Col1a1P11087 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Col1a1P11087 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Col1a1P11087 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Col1a1P11087 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC26.78■■□□□ 1.88
Col1a1P11087 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC26.78■■□□□ 1.88
Col1a1P11087 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Col1a1P11087 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC26.76■■□□□ 1.87
Col1a1P11087 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Col1a1P11087 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Col1a1P11087 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Col1a1P11087 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC26.75■■□□□ 1.87
Col1a1P11087 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC26.75■■□□□ 1.87
Col1a1P11087 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Col1a1P11087 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Col1a1P11087 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Col1a1P11087 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Col1a1P11087 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
Col1a1P11087 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Col1a1P11087 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC26.73■■□□□ 1.87
Col1a1P11087 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Col1a1P11087 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC26.73■■□□□ 1.87
Col1a1P11087 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Col1a1P11087 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
Col1a1P11087 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC26.72■■□□□ 1.87
Col1a1P11087 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Col1a1P11087 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
Col1a1P11087 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC26.72■■□□□ 1.87
Col1a1P11087 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Col1a1P11087 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Col1a1P11087 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
Col1a1P11087 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Col1a1P11087 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Col1a1P11087 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
Col1a1P11087 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC26.7■■□□□ 1.87
Col1a1P11087 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
Col1a1P11087 Etf1-202ENSMUST00000180351 108 ntBASIC26.69■■□□□ 1.86
Col1a1P11087 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Col1a1P11087 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Col1a1P11087 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Col1a1P11087 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Col1a1P11087 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Col1a1P11087 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC26.68■■□□□ 1.86
Col1a1P11087 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Col1a1P11087 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC26.68■■□□□ 1.86
Col1a1P11087 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC26.68■■□□□ 1.86
Col1a1P11087 Gm5131-201ENSMUST00000212776 1238 ntBASIC26.68■■□□□ 1.86
Col1a1P11087 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
Col1a1P11087 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Col1a1P11087 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
Col1a1P11087 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
Col1a1P11087 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
Col1a1P11087 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC26.66■■□□□ 1.86
Col1a1P11087 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Col1a1P11087 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC26.65■■□□□ 1.86
Col1a1P11087 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Col1a1P11087 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC26.65■■□□□ 1.86
Col1a1P11087 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
Col1a1P11087 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC26.65■■□□□ 1.86
Col1a1P11087 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Col1a1P11087 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.86
Col1a1P11087 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Col1a1P11087 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Col1a1P11087 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
Col1a1P11087 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Col1a1P11087 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC26.63■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 181.4 ms