Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Nkx2-4Q9EQM3 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC23.7■■□□□ 1.38
Nkx2-4Q9EQM3 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC23.69■■□□□ 1.38
Nkx2-4Q9EQM3 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
Nkx2-4Q9EQM3 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Nkx2-4Q9EQM3 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Nkx2-4Q9EQM3 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Nkx2-4Q9EQM3 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Nkx2-4Q9EQM3 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Nkx2-4Q9EQM3 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Nkx2-4Q9EQM3 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Nkx2-4Q9EQM3 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Nkx2-4Q9EQM3 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Nkx2-4Q9EQM3 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
Nkx2-4Q9EQM3 Etf1-202ENSMUST00000180351 108 ntBASIC23.66■■□□□ 1.38
Nkx2-4Q9EQM3 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC23.66■■□□□ 1.38
Nkx2-4Q9EQM3 AC117769.4-201ENSMUST00000225679 685 ntBASIC23.66■■□□□ 1.38
Nkx2-4Q9EQM3 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Nkx2-4Q9EQM3 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Nkx2-4Q9EQM3 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC23.65■■□□□ 1.38
Nkx2-4Q9EQM3 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Nkx2-4Q9EQM3 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Nkx2-4Q9EQM3 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
Nkx2-4Q9EQM3 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Nkx2-4Q9EQM3 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Nkx2-4Q9EQM3 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Nkx2-4Q9EQM3 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Nkx2-4Q9EQM3 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
Nkx2-4Q9EQM3 Gm43445-201ENSMUST00000198564 2091 ntBASIC23.63■■□□□ 1.37
Nkx2-4Q9EQM3 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Nkx2-4Q9EQM3 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Nkx2-4Q9EQM3 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC23.62■■□□□ 1.37
Nkx2-4Q9EQM3 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC23.62■■□□□ 1.37
Nkx2-4Q9EQM3 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Nkx2-4Q9EQM3 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Nkx2-4Q9EQM3 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Nkx2-4Q9EQM3 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Nkx2-4Q9EQM3 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Nkx2-4Q9EQM3 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
Nkx2-4Q9EQM3 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Nkx2-4Q9EQM3 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC23.6■■□□□ 1.37
Nkx2-4Q9EQM3 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC23.6■■□□□ 1.37
Nkx2-4Q9EQM3 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Nkx2-4Q9EQM3 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC23.59■■□□□ 1.37
Nkx2-4Q9EQM3 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC23.59■■□□□ 1.37
Nkx2-4Q9EQM3 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Nkx2-4Q9EQM3 Zxda-201ENSMUST00000117281 2621 ntBASIC23.58■■□□□ 1.37
Nkx2-4Q9EQM3 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
Nkx2-4Q9EQM3 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Nkx2-4Q9EQM3 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
Nkx2-4Q9EQM3 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Nkx2-4Q9EQM3 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Nkx2-4Q9EQM3 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
Nkx2-4Q9EQM3 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC23.56■■□□□ 1.36
Nkx2-4Q9EQM3 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nkx2-4Q9EQM3 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC23.56■■□□□ 1.36
Nkx2-4Q9EQM3 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nkx2-4Q9EQM3 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Nkx2-4Q9EQM3 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC23.55■■□□□ 1.36
Nkx2-4Q9EQM3 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Nkx2-4Q9EQM3 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Nkx2-4Q9EQM3 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
Nkx2-4Q9EQM3 Gm10232-201ENSMUST00000089221 720 ntBASIC23.55■■□□□ 1.36
Nkx2-4Q9EQM3 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC23.55■■□□□ 1.36
Nkx2-4Q9EQM3 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Nkx2-4Q9EQM3 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Nkx2-4Q9EQM3 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Nkx2-4Q9EQM3 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Nkx2-4Q9EQM3 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Nkx2-4Q9EQM3 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Nkx2-4Q9EQM3 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
Nkx2-4Q9EQM3 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Nkx2-4Q9EQM3 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Nkx2-4Q9EQM3 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Nkx2-4Q9EQM3 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Nkx2-4Q9EQM3 Serp2-204ENSMUST00000228055 705 ntBASIC23.52■■□□□ 1.36
Nkx2-4Q9EQM3 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Nkx2-4Q9EQM3 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Nkx2-4Q9EQM3 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
Nkx2-4Q9EQM3 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
Nkx2-4Q9EQM3 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC23.5■■□□□ 1.35
Nkx2-4Q9EQM3 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Nkx2-4Q9EQM3 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Nkx2-4Q9EQM3 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC23.5■■□□□ 1.35
Nkx2-4Q9EQM3 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC23.5■■□□□ 1.35
Nkx2-4Q9EQM3 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC23.5■■□□□ 1.35
Nkx2-4Q9EQM3 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC23.49■■□□□ 1.35
Nkx2-4Q9EQM3 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Nkx2-4Q9EQM3 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Nkx2-4Q9EQM3 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Nkx2-4Q9EQM3 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Nkx2-4Q9EQM3 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
Nkx2-4Q9EQM3 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Nkx2-4Q9EQM3 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
Nkx2-4Q9EQM3 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Nkx2-4Q9EQM3 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Nkx2-4Q9EQM3 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC23.47■■□□□ 1.35
Nkx2-4Q9EQM3 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Nkx2-4Q9EQM3 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC23.47■■□□□ 1.35
Nkx2-4Q9EQM3 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC23.47■■□□□ 1.35
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms