Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Gm44428-201ENSMUST00000204474 874 ntBASIC39.77■■■■□ 3.96
Trim41Q5NCC3 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC39.76■■■■□ 3.96
Trim41Q5NCC3 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC39.75■■■■□ 3.95
Trim41Q5NCC3 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC39.75■■■■□ 3.95
Trim41Q5NCC3 Fezf2-202ENSMUST00000224023 1917 ntBASIC39.74■■■■□ 3.95
Trim41Q5NCC3 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC39.74■■■■□ 3.95
Trim41Q5NCC3 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC39.74■■■■□ 3.95
Trim41Q5NCC3 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC39.74■■■■□ 3.95
Trim41Q5NCC3 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC39.73■■■■□ 3.95
Trim41Q5NCC3 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC39.72■■■■□ 3.95
Trim41Q5NCC3 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC39.72■■■■□ 3.95
Trim41Q5NCC3 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC39.72■■■■□ 3.95
Trim41Q5NCC3 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC39.71■■■■□ 3.95
Trim41Q5NCC3 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC39.71■■■■□ 3.95
Trim41Q5NCC3 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC39.71■■■■□ 3.95
Trim41Q5NCC3 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC39.7■■■■□ 3.95
Trim41Q5NCC3 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC39.69■■■■□ 3.94
Trim41Q5NCC3 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC39.69■■■■□ 3.94
Trim41Q5NCC3 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC39.69■■■■□ 3.94
Trim41Q5NCC3 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC39.68■■■■□ 3.94
Trim41Q5NCC3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC39.68■■■■□ 3.94
Trim41Q5NCC3 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC39.67■■■■□ 3.94
Trim41Q5NCC3 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC39.66■■■■□ 3.94
Trim41Q5NCC3 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC39.66■■■■□ 3.94
Trim41Q5NCC3 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC39.66■■■■□ 3.94
Trim41Q5NCC3 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC39.65■■■■□ 3.94
Trim41Q5NCC3 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC39.64■■■■□ 3.94
Trim41Q5NCC3 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC39.64■■■■□ 3.94
Trim41Q5NCC3 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC39.64■■■■□ 3.94
Trim41Q5NCC3 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC39.63■■■■□ 3.93
Trim41Q5NCC3 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC39.63■■■■□ 3.93
Trim41Q5NCC3 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
Trim41Q5NCC3 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC39.61■■■■□ 3.93
Trim41Q5NCC3 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC39.61■■■■□ 3.93
Trim41Q5NCC3 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC39.61■■■■□ 3.93
Trim41Q5NCC3 Gm9959-201ENSMUST00000068277 390 ntBASIC39.6■■■■□ 3.93
Trim41Q5NCC3 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
Trim41Q5NCC3 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
Trim41Q5NCC3 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC39.6■■■■□ 3.93
Trim41Q5NCC3 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC39.59■■■■□ 3.93
Trim41Q5NCC3 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC39.59■■■■□ 3.93
Trim41Q5NCC3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC39.59■■■■□ 3.93
Trim41Q5NCC3 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC39.58■■■■□ 3.93
Trim41Q5NCC3 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC39.58■■■■□ 3.93
Trim41Q5NCC3 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC39.57■■■■□ 3.93
Trim41Q5NCC3 Gm45444-201ENSMUST00000211394 898 ntBASIC39.57■■■■□ 3.93
Trim41Q5NCC3 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC39.57■■■■□ 3.93
Trim41Q5NCC3 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC39.56■■■■□ 3.92
Trim41Q5NCC3 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC39.56■■■■□ 3.92
Trim41Q5NCC3 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC39.55■■■■□ 3.92
Trim41Q5NCC3 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC39.55■■■■□ 3.92
Trim41Q5NCC3 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
Trim41Q5NCC3 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC39.55■■■■□ 3.92
Trim41Q5NCC3 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
Trim41Q5NCC3 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC39.54■■■■□ 3.92
Trim41Q5NCC3 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC39.54■■■■□ 3.92
Trim41Q5NCC3 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC39.54■■■■□ 3.92
Trim41Q5NCC3 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC39.53■■■■□ 3.92
Trim41Q5NCC3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC39.52■■■■□ 3.92
Trim41Q5NCC3 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC39.52■■■■□ 3.92
Trim41Q5NCC3 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC39.52■■■■□ 3.92
Trim41Q5NCC3 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
Trim41Q5NCC3 Slc35b2-207ENSMUST00000226086 850 ntBASIC39.51■■■■□ 3.92
Trim41Q5NCC3 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC39.5■■■■□ 3.91
Trim41Q5NCC3 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC39.49■■■■□ 3.91
Trim41Q5NCC3 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC39.49■■■■□ 3.91
Trim41Q5NCC3 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC39.49■■■■□ 3.91
Trim41Q5NCC3 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC39.49■■■■□ 3.91
Trim41Q5NCC3 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC39.48■■■■□ 3.91
Trim41Q5NCC3 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC39.48■■■■□ 3.91
Trim41Q5NCC3 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC39.48■■■■□ 3.91
Trim41Q5NCC3 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC39.48■■■■□ 3.91
Trim41Q5NCC3 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC39.45■■■■□ 3.91
Trim41Q5NCC3 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
Trim41Q5NCC3 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC39.44■■■■□ 3.9
Trim41Q5NCC3 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC39.44■■■■□ 3.9
Trim41Q5NCC3 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC39.43■■■■□ 3.9
Trim41Q5NCC3 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC39.42■■■■□ 3.9
Trim41Q5NCC3 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC39.41■■■■□ 3.9
Trim41Q5NCC3 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
Trim41Q5NCC3 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC39.41■■■■□ 3.9
Trim41Q5NCC3 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC39.4■■■■□ 3.9
Trim41Q5NCC3 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC39.4■■■■□ 3.9
Trim41Q5NCC3 Gm13238-201ENSMUST00000117655 780 ntBASIC39.4■■■■□ 3.9
Trim41Q5NCC3 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC39.4■■■■□ 3.9
Trim41Q5NCC3 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC39.4■■■■□ 3.9
Trim41Q5NCC3 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC39.39■■■■□ 3.9
Trim41Q5NCC3 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC39.39■■■■□ 3.9
Trim41Q5NCC3 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC39.39■■■■□ 3.9
Trim41Q5NCC3 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC39.38■■■■□ 3.89
Trim41Q5NCC3 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC39.37■■■■□ 3.89
Trim41Q5NCC3 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC39.36■■■■□ 3.89
Trim41Q5NCC3 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC39.36■■■■□ 3.89
Trim41Q5NCC3 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC39.36■■■■□ 3.89
Trim41Q5NCC3 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC39.36■■■■□ 3.89
Trim41Q5NCC3 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC39.35■■■■□ 3.89
Trim41Q5NCC3 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC39.35■■■■□ 3.89
Trim41Q5NCC3 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
Trim41Q5NCC3 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC39.35■■■■□ 3.89
Trim41Q5NCC3 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC39.34■■■■□ 3.89
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms