Protein–RNA interactions for Protein: Q3U1D9

UPF0602 protein C4orf47 homolog, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q3U1D9 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Q3U1D9 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Q3U1D9 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Q3U1D9 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Q3U1D9 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Q3U1D9 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Q3U1D9 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Q3U1D9 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
Q3U1D9 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Q3U1D9 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Q3U1D9 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC19.58■□□□□ 0.72
Q3U1D9 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Q3U1D9 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Q3U1D9 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Q3U1D9 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.58■□□□□ 0.72
Q3U1D9 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Q3U1D9 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Q3U1D9 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Q3U1D9 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Q3U1D9 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Q3U1D9 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
Q3U1D9 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Q3U1D9 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Q3U1D9 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Q3U1D9 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Q3U1D9 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Q3U1D9 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Q3U1D9 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.55■□□□□ 0.72
Q3U1D9 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Q3U1D9 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Q3U1D9 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Q3U1D9 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Q3U1D9 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Q3U1D9 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.54■□□□□ 0.72
Q3U1D9 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Q3U1D9 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Q3U1D9 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Q3U1D9 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Q3U1D9 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Q3U1D9 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Q3U1D9 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Q3U1D9 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Q3U1D9 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Q3U1D9 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Q3U1D9 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
Q3U1D9 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Q3U1D9 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Q3U1D9 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Q3U1D9 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC19.51■□□□□ 0.71
Q3U1D9 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Q3U1D9 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC19.51■□□□□ 0.71
Q3U1D9 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Q3U1D9 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Q3U1D9 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Q3U1D9 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Q3U1D9 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Q3U1D9 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC19.5■□□□□ 0.71
Q3U1D9 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Q3U1D9 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Q3U1D9 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Q3U1D9 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Q3U1D9 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC19.5■□□□□ 0.71
Q3U1D9 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Q3U1D9 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Q3U1D9 Gm5921-201ENSMUST00000075898 882 ntBASIC19.49■□□□□ 0.71
Q3U1D9 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Q3U1D9 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Q3U1D9 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Q3U1D9 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Q3U1D9 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Q3U1D9 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Q3U1D9 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Q3U1D9 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Q3U1D9 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Q3U1D9 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Q3U1D9 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Q3U1D9 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Q3U1D9 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Q3U1D9 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Q3U1D9 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Q3U1D9 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Q3U1D9 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Q3U1D9 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Q3U1D9 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Q3U1D9 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC19.43■□□□□ 0.7
Q3U1D9 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Q3U1D9 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Q3U1D9 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Q3U1D9 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Q3U1D9 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC19.42■□□□□ 0.7
Q3U1D9 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Q3U1D9 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Q3U1D9 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Q3U1D9 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Q3U1D9 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Q3U1D9 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Q3U1D9 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Q3U1D9 Gm43592-201ENSMUST00000196922 1165 ntBASIC19.4■□□□□ 0.7
Q3U1D9 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Q3U1D9 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 10.8 ms