Protein–RNA interactions for Protein: P23440

Pde6b, Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta, mousemouse

Predictions only

Length 856 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pde6bP23440 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC24.48■■□□□ 1.51
Pde6bP23440 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Pde6bP23440 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC24.47■■□□□ 1.51
Pde6bP23440 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
Pde6bP23440 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC24.47■■□□□ 1.51
Pde6bP23440 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Pde6bP23440 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Pde6bP23440 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Pde6bP23440 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Pde6bP23440 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Pde6bP23440 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
Pde6bP23440 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Pde6bP23440 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Pde6bP23440 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Pde6bP23440 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Pde6bP23440 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Pde6bP23440 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC24.44■■□□□ 1.5
Pde6bP23440 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Pde6bP23440 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Pde6bP23440 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Pde6bP23440 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Pde6bP23440 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
Pde6bP23440 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Pde6bP23440 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Pde6bP23440 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Pde6bP23440 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Pde6bP23440 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC24.42■■□□□ 1.5
Pde6bP23440 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Pde6bP23440 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Pde6bP23440 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
Pde6bP23440 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
Pde6bP23440 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Pde6bP23440 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC24.4■■□□□ 1.5
Pde6bP23440 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Pde6bP23440 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Pde6bP23440 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Pde6bP23440 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Pde6bP23440 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
Pde6bP23440 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Pde6bP23440 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Pde6bP23440 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Pde6bP23440 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Pde6bP23440 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC24.36■■□□□ 1.49
Pde6bP23440 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Pde6bP23440 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC24.35■■□□□ 1.49
Pde6bP23440 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
Pde6bP23440 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
Pde6bP23440 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC24.35■■□□□ 1.49
Pde6bP23440 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Pde6bP23440 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
Pde6bP23440 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Pde6bP23440 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
Pde6bP23440 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
Pde6bP23440 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC24.32■■□□□ 1.48
Pde6bP23440 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Pde6bP23440 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Pde6bP23440 Gm15546-201ENSMUST00000122095 826 ntBASIC24.32■■□□□ 1.48
Pde6bP23440 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Pde6bP23440 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Pde6bP23440 AC117769.4-201ENSMUST00000225679 685 ntBASIC24.32■■□□□ 1.48
Pde6bP23440 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
Pde6bP23440 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC24.31■■□□□ 1.48
Pde6bP23440 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Pde6bP23440 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC24.31■■□□□ 1.48
Pde6bP23440 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Pde6bP23440 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC24.3■■□□□ 1.48
Pde6bP23440 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Pde6bP23440 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
Pde6bP23440 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC24.29■■□□□ 1.48
Pde6bP23440 Gm43592-201ENSMUST00000196922 1165 ntBASIC24.29■■□□□ 1.48
Pde6bP23440 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Pde6bP23440 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
Pde6bP23440 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Pde6bP23440 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Pde6bP23440 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
Pde6bP23440 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Pde6bP23440 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
Pde6bP23440 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pde6bP23440 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pde6bP23440 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pde6bP23440 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
Pde6bP23440 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Pde6bP23440 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
Pde6bP23440 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pde6bP23440 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
Pde6bP23440 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pde6bP23440 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pde6bP23440 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pde6bP23440 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Pde6bP23440 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Pde6bP23440 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Pde6bP23440 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
Pde6bP23440 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Pde6bP23440 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
Pde6bP23440 Gm5522-201ENSMUST00000189483 1242 ntBASIC24.23■■□□□ 1.47
Pde6bP23440 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Pde6bP23440 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Pde6bP23440 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Pde6bP23440 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
Pde6bP23440 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC24.22■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms