Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Cops4O88544 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cops4O88544 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Cops4O88544 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.7■□□□□ 0.91
Cops4O88544 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cops4O88544 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cops4O88544 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cops4O88544 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cops4O88544 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cops4O88544 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cops4O88544 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cops4O88544 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cops4O88544 Gm30023-201ENSMUST00000197970 889 ntBASIC20.68■□□□□ 0.9
Cops4O88544 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cops4O88544 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cops4O88544 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Cops4O88544 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Cops4O88544 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cops4O88544 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cops4O88544 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cops4O88544 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cops4O88544 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Cops4O88544 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cops4O88544 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Cops4O88544 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cops4O88544 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cops4O88544 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cops4O88544 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cops4O88544 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cops4O88544 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cops4O88544 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Cops4O88544 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.63■□□□□ 0.89
Cops4O88544 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cops4O88544 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.63■□□□□ 0.89
Cops4O88544 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.63■□□□□ 0.89
Cops4O88544 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Cops4O88544 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cops4O88544 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Cops4O88544 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Cops4O88544 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cops4O88544 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cops4O88544 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.63■□□□□ 0.89
Cops4O88544 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Cops4O88544 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cops4O88544 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Cops4O88544 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.62■□□□□ 0.89
Cops4O88544 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cops4O88544 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cops4O88544 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cops4O88544 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cops4O88544 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cops4O88544 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cops4O88544 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cops4O88544 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cops4O88544 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cops4O88544 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cops4O88544 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Cops4O88544 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC20.61■□□□□ 0.89
Cops4O88544 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cops4O88544 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cops4O88544 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cops4O88544 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cops4O88544 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cops4O88544 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cops4O88544 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cops4O88544 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cops4O88544 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.6■□□□□ 0.89
Cops4O88544 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cops4O88544 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cops4O88544 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cops4O88544 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.59■□□□□ 0.89
Cops4O88544 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cops4O88544 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Cops4O88544 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cops4O88544 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cops4O88544 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Cops4O88544 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cops4O88544 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
Cops4O88544 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.58■□□□□ 0.88
Cops4O88544 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cops4O88544 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cops4O88544 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Cops4O88544 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Cops4O88544 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cops4O88544 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cops4O88544 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Cops4O88544 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cops4O88544 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Cops4O88544 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cops4O88544 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cops4O88544 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.57■□□□□ 0.88
Cops4O88544 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.57■□□□□ 0.88
Cops4O88544 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cops4O88544 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cops4O88544 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cops4O88544 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cops4O88544 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cops4O88544 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cops4O88544 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cops4O88544 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms