Protein–RNA interactions for Protein: O88427

Cacna1h, Voltage-dependent T-type calcium channel subunit alpha-1H, mousemouse

Predictions only

Length 2,365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1hO88427 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Cacna1hO88427 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
Cacna1hO88427 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Cacna1hO88427 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC22.81■■□□□ 1.24
Cacna1hO88427 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Cacna1hO88427 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Cacna1hO88427 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Cacna1hO88427 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Cacna1hO88427 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Cacna1hO88427 Gm9847-201ENSMUST00000052528 599 ntBASIC22.79■■□□□ 1.24
Cacna1hO88427 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Cacna1hO88427 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cacna1hO88427 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Cacna1hO88427 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Cacna1hO88427 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC22.77■■□□□ 1.24
Cacna1hO88427 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Cacna1hO88427 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC22.77■■□□□ 1.24
Cacna1hO88427 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
Cacna1hO88427 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Cacna1hO88427 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
Cacna1hO88427 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC22.76■■□□□ 1.23
Cacna1hO88427 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
Cacna1hO88427 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Cacna1hO88427 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Cacna1hO88427 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
Cacna1hO88427 Appbp2os-202ENSMUST00000206972 447 ntBASIC22.75■■□□□ 1.23
Cacna1hO88427 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Cacna1hO88427 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Cacna1hO88427 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC22.74■■□□□ 1.23
Cacna1hO88427 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC22.74■■□□□ 1.23
Cacna1hO88427 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Cacna1hO88427 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
Cacna1hO88427 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC22.73■■□□□ 1.23
Cacna1hO88427 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC22.73■■□□□ 1.23
Cacna1hO88427 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
Cacna1hO88427 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Cacna1hO88427 Gm37847-201ENSMUST00000192163 1497 ntBASIC22.72■■□□□ 1.23
Cacna1hO88427 Gm31748-201ENSMUST00000194938 1497 ntBASIC22.72■■□□□ 1.23
Cacna1hO88427 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Cacna1hO88427 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC22.72■■□□□ 1.23
Cacna1hO88427 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Cacna1hO88427 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Cacna1hO88427 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Cacna1hO88427 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC22.71■■□□□ 1.23
Cacna1hO88427 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
Cacna1hO88427 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Cacna1hO88427 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC22.71■■□□□ 1.23
Cacna1hO88427 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Cacna1hO88427 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Cacna1hO88427 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC22.7■■□□□ 1.22
Cacna1hO88427 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Cacna1hO88427 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC22.69■■□□□ 1.22
Cacna1hO88427 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Cacna1hO88427 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Cacna1hO88427 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
Cacna1hO88427 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Cacna1hO88427 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cacna1hO88427 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cacna1hO88427 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cacna1hO88427 Gm5131-201ENSMUST00000212776 1238 ntBASIC22.67■■□□□ 1.22
Cacna1hO88427 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cacna1hO88427 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Cacna1hO88427 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Cacna1hO88427 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Cacna1hO88427 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cacna1hO88427 Gm12922-201ENSMUST00000120626 809 ntBASIC22.64■■□□□ 1.22
Cacna1hO88427 Gm7417-201ENSMUST00000192950 473 ntBASIC22.64■■□□□ 1.22
Cacna1hO88427 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Cacna1hO88427 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Cacna1hO88427 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Cacna1hO88427 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC22.63■■□□□ 1.21
Cacna1hO88427 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Cacna1hO88427 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC22.62■■□□□ 1.21
Cacna1hO88427 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Cacna1hO88427 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Cacna1hO88427 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cacna1hO88427 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
Cacna1hO88427 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cacna1hO88427 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cacna1hO88427 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Cacna1hO88427 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Cacna1hO88427 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Cacna1hO88427 Flvcr1-202ENSMUST00000191946 1216 ntBASIC22.6■■□□□ 1.21
Cacna1hO88427 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC22.59■■□□□ 1.21
Cacna1hO88427 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cacna1hO88427 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cacna1hO88427 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
Cacna1hO88427 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC22.59■■□□□ 1.21
Cacna1hO88427 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Cacna1hO88427 Spcs1-207ENSMUST00000228767 1008 ntBASIC22.58■■□□□ 1.21
Cacna1hO88427 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Cacna1hO88427 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC22.58■■□□□ 1.21
Cacna1hO88427 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Cacna1hO88427 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC22.58■■□□□ 1.21
Cacna1hO88427 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Cacna1hO88427 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.2
Cacna1hO88427 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC22.57■■□□□ 1.2
Cacna1hO88427 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Cacna1hO88427 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Cacna1hO88427 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms