Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Ube4aE9Q735 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
Ube4aE9Q735 Gm5812-201ENSMUST00000061073 957 ntBASIC27.59■■■□□ 2.01
Ube4aE9Q735 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
Ube4aE9Q735 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Ube4aE9Q735 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Ube4aE9Q735 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC27.57■■■□□ 2
Ube4aE9Q735 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Ube4aE9Q735 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC27.57■■■□□ 2
Ube4aE9Q735 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC27.57■■■□□ 2
Ube4aE9Q735 Gm43592-201ENSMUST00000196922 1165 ntBASIC27.56■■■□□ 2
Ube4aE9Q735 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC27.56■■■□□ 2
Ube4aE9Q735 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC27.56■■■□□ 2
Ube4aE9Q735 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC27.56■■■□□ 2
Ube4aE9Q735 AC122428.3-201ENSMUST00000215551 2290 ntBASIC27.55■■■□□ 2
Ube4aE9Q735 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Ube4aE9Q735 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC27.55■■■□□ 2
Ube4aE9Q735 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC27.54■■■□□ 2
Ube4aE9Q735 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Ube4aE9Q735 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC27.53■■■□□ 2
Ube4aE9Q735 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC27.53■■■□□ 2
Ube4aE9Q735 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Ube4aE9Q735 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC27.52■■■□□ 2
Ube4aE9Q735 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Ube4aE9Q735 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Ube4aE9Q735 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Ube4aE9Q735 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Ube4aE9Q735 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Ube4aE9Q735 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Ube4aE9Q735 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Ube4aE9Q735 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Ube4aE9Q735 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Ube4aE9Q735 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
Ube4aE9Q735 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC27.48■■□□□ 1.99
Ube4aE9Q735 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC27.48■■□□□ 1.99
Ube4aE9Q735 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Ube4aE9Q735 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Ube4aE9Q735 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC27.47■■□□□ 1.99
Ube4aE9Q735 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Ube4aE9Q735 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
Ube4aE9Q735 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.99
Ube4aE9Q735 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
Ube4aE9Q735 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC27.46■■□□□ 1.99
Ube4aE9Q735 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Ube4aE9Q735 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Ube4aE9Q735 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
Ube4aE9Q735 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC27.45■■□□□ 1.98
Ube4aE9Q735 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Ube4aE9Q735 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Ube4aE9Q735 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Ube4aE9Q735 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC27.44■■□□□ 1.98
Ube4aE9Q735 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC27.44■■□□□ 1.98
Ube4aE9Q735 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC27.43■■□□□ 1.98
Ube4aE9Q735 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Ube4aE9Q735 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Ube4aE9Q735 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC27.43■■□□□ 1.98
Ube4aE9Q735 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Ube4aE9Q735 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC27.42■■□□□ 1.98
Ube4aE9Q735 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
Ube4aE9Q735 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Ube4aE9Q735 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
Ube4aE9Q735 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.98
Ube4aE9Q735 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Ube4aE9Q735 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
Ube4aE9Q735 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Ube4aE9Q735 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Ube4aE9Q735 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC27.4■■□□□ 1.98
Ube4aE9Q735 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
Ube4aE9Q735 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Ube4aE9Q735 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
Ube4aE9Q735 AC164433.2-201ENSMUST00000226346 1701 ntBASIC27.38■■□□□ 1.97
Ube4aE9Q735 Nsd1-203ENSMUST00000224156 1149 ntBASIC27.38■■□□□ 1.97
Ube4aE9Q735 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC27.38■■□□□ 1.97
Ube4aE9Q735 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC27.38■■□□□ 1.97
Ube4aE9Q735 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC27.37■■□□□ 1.97
Ube4aE9Q735 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Ube4aE9Q735 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
Ube4aE9Q735 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC27.37■■□□□ 1.97
Ube4aE9Q735 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Ube4aE9Q735 Gm13238-201ENSMUST00000117655 780 ntBASIC27.36■■□□□ 1.97
Ube4aE9Q735 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC27.36■■□□□ 1.97
Ube4aE9Q735 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
Ube4aE9Q735 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Ube4aE9Q735 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Ube4aE9Q735 Gm15546-201ENSMUST00000122095 826 ntBASIC27.35■■□□□ 1.97
Ube4aE9Q735 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
Ube4aE9Q735 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Ube4aE9Q735 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC27.34■■□□□ 1.97
Ube4aE9Q735 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC27.34■■□□□ 1.97
Ube4aE9Q735 Gm43566-201ENSMUST00000196851 808 ntBASIC27.34■■□□□ 1.97
Ube4aE9Q735 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
Ube4aE9Q735 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Ube4aE9Q735 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Ube4aE9Q735 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC27.33■■□□□ 1.97
Ube4aE9Q735 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC27.33■■□□□ 1.97
Ube4aE9Q735 Gm7199-201ENSMUST00000118327 1485 ntBASIC27.32■■□□□ 1.96
Ube4aE9Q735 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC27.32■■□□□ 1.96
Ube4aE9Q735 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC27.32■■□□□ 1.96
Ube4aE9Q735 Gm45444-201ENSMUST00000211394 898 ntBASIC27.32■■□□□ 1.96
Ube4aE9Q735 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Retrieved 100 of 76,532 protein–RNA pairs in 73.2 ms