Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Gm25239-201ENSMUST00000174915 86 ntBASIC47.56■■■■■ 5.2
Ube4aE9Q735 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC43.97■■■■■ 4.63
Ube4aE9Q735 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC43.39■■■■■ 4.54
Ube4aE9Q735 Gm15042-201ENSMUST00000120212 883 ntBASIC41.52■■■■■ 4.24
Ube4aE9Q735 Gm24109-201ENSMUST00000175489 103 ntBASIC41.23■■■■■ 4.19
Ube4aE9Q735 Gm15045-201ENSMUST00000117359 883 ntBASIC40.62■■■■■ 4.09
Ube4aE9Q735 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC40.5■■■■■ 4.07
Ube4aE9Q735 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC40.29■■■■■ 4.04
Ube4aE9Q735 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC40.17■■■■■ 4.02
Ube4aE9Q735 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC39.91■■■■□ 3.98
Ube4aE9Q735 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
Ube4aE9Q735 Gm23366-201ENSMUST00000175022 89 ntBASIC39.71■■■■□ 3.95
Ube4aE9Q735 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC39.51■■■■□ 3.92
Ube4aE9Q735 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC39.26■■■■□ 3.87
Ube4aE9Q735 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
Ube4aE9Q735 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC38.44■■■■□ 3.74
Ube4aE9Q735 AC153911.1-202ENSMUST00000218534 1034 ntBASIC38.43■■■■□ 3.74
Ube4aE9Q735 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC38.38■■■■□ 3.73
Ube4aE9Q735 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC38.3■■■■□ 3.72
Ube4aE9Q735 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC38.27■■■■□ 3.72
Ube4aE9Q735 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC38.18■■■■□ 3.7
Ube4aE9Q735 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC38.09■■■■□ 3.69
Ube4aE9Q735 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC38.01■■■■□ 3.68
Ube4aE9Q735 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
Ube4aE9Q735 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC37.83■■■■□ 3.65
Ube4aE9Q735 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC37.75■■■■□ 3.63
Ube4aE9Q735 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
Ube4aE9Q735 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC37.71■■■■□ 3.63
Ube4aE9Q735 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
Ube4aE9Q735 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC37.64■■■■□ 3.62
Ube4aE9Q735 Gm25238-201ENSMUST00000174914 89 ntBASIC37.56■■■■□ 3.6
Ube4aE9Q735 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC37.56■■■■□ 3.6
Ube4aE9Q735 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC37.54■■■■□ 3.6
Ube4aE9Q735 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC37.46■■■■□ 3.59
Ube4aE9Q735 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC37.44■■■■□ 3.58
Ube4aE9Q735 Psd-208ENSMUST00000224556 2034 ntBASIC37.22■■■■□ 3.55
Ube4aE9Q735 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC37.17■■■■□ 3.54
Ube4aE9Q735 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC36.85■■■■□ 3.49
Ube4aE9Q735 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC36.82■■■■□ 3.48
Ube4aE9Q735 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC36.68■■■■□ 3.46
Ube4aE9Q735 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC36.62■■■■□ 3.45
Ube4aE9Q735 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC36.53■■■■□ 3.44
Ube4aE9Q735 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC36.43■■■■□ 3.42
Ube4aE9Q735 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC36.43■■■■□ 3.42
Ube4aE9Q735 Gm27325-201ENSMUST00000175467 74 ntBASIC36.41■■■■□ 3.42
Ube4aE9Q735 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC36.4■■■■□ 3.42
Ube4aE9Q735 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
Ube4aE9Q735 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.4
Ube4aE9Q735 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
Ube4aE9Q735 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC36.18■■■■□ 3.38
Ube4aE9Q735 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC36.15■■■■□ 3.38
Ube4aE9Q735 Gm25262-201ENSMUST00000174934 133 ntBASIC35.98■■■■□ 3.35
Ube4aE9Q735 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC35.86■■■■□ 3.33
Ube4aE9Q735 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
Ube4aE9Q735 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC35.85■■■■□ 3.33
Ube4aE9Q735 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
Ube4aE9Q735 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC35.83■■■■□ 3.33
Ube4aE9Q735 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
Ube4aE9Q735 Rab21-202ENSMUST00000218831 843 ntBASIC35.76■■■■□ 3.32
Ube4aE9Q735 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC35.65■■■■□ 3.3
Ube4aE9Q735 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
Ube4aE9Q735 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
Ube4aE9Q735 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC35.5■■■■□ 3.27
Ube4aE9Q735 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
Ube4aE9Q735 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC35.45■■■■□ 3.27
Ube4aE9Q735 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC35.43■■■■□ 3.26
Ube4aE9Q735 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC35.38■■■■□ 3.25
Ube4aE9Q735 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC35.35■■■■□ 3.25
Ube4aE9Q735 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC35.29■■■■□ 3.24
Ube4aE9Q735 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
Ube4aE9Q735 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC35.26■■■■□ 3.24
Ube4aE9Q735 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC35.26■■■■□ 3.24
Ube4aE9Q735 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
Ube4aE9Q735 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
Ube4aE9Q735 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC35.24■■■■□ 3.23
Ube4aE9Q735 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC35.23■■■■□ 3.23
Ube4aE9Q735 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
Ube4aE9Q735 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
Ube4aE9Q735 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
Ube4aE9Q735 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC35.13■■■■□ 3.21
Ube4aE9Q735 Gm26115-201ENSMUST00000175605 87 ntBASIC35.1■■■■□ 3.21
Ube4aE9Q735 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC35.03■■■■□ 3.2
Ube4aE9Q735 Gm10524-201ENSMUST00000181931 1893 ntBASIC35.02■■■■□ 3.2
Ube4aE9Q735 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
Ube4aE9Q735 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
Ube4aE9Q735 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
Ube4aE9Q735 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
Ube4aE9Q735 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC34.91■■■■□ 3.18
Ube4aE9Q735 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC34.9■■■■□ 3.18
Ube4aE9Q735 Gm8109-201ENSMUST00000194076 746 ntBASIC34.88■■■■□ 3.17
Ube4aE9Q735 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC34.85■■■■□ 3.17
Ube4aE9Q735 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC34.85■■■■□ 3.17
Ube4aE9Q735 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
Ube4aE9Q735 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34.82■■■■□ 3.16
Ube4aE9Q735 CT025624.2-201ENSMUST00000223609 1909 ntBASIC34.74■■■■□ 3.15
Ube4aE9Q735 Gm42596-201ENSMUST00000196305 1958 ntBASIC34.71■■■■□ 3.15
Ube4aE9Q735 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
Ube4aE9Q735 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
Ube4aE9Q735 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC34.65■■■■□ 3.14
Ube4aE9Q735 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC34.63■■■■□ 3.13
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms